View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_low_44 (Length: 263)

Name: NF0707_low_44
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_low_44
NF0707_low_44
[»] chr1 (6 HSPs)
chr1 (1-198)||(13888626-13888823)
chr1 (5-200)||(13895885-13896080)
chr1 (46-145)||(13892932-13893031)
chr1 (1-147)||(13893156-13893303)
chr1 (59-135)||(13891600-13891676)
chr1 (58-119)||(12963957-12964018)
[»] chr7 (1 HSPs)
chr7 (5-200)||(1033877-1034072)
[»] chr4 (1 HSPs)
chr4 (8-132)||(28665866-28665987)
[»] chr6 (4 HSPs)
chr6 (58-123)||(346889-346954)
chr6 (58-123)||(355548-355613)
chr6 (58-123)||(377548-377613)
chr6 (65-105)||(341850-341890)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 13888823 - 13888626
Alignment:
Q  1 attgaaagcagtgaatttgtacgcagattcacctatgaaatgaccatctttagttaaccatctttctggcttgaactccaagcaatcttttccccatatg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13888823 attgaaagcagtgaatttgtacgcagattcaccgatgaaatgaccatctttagttaaccatctttctggcttgaactccaagcaatcttttccccatatg 13888724  T
Q  101 ttttccattcttcccattgaatatattgcatatataatttttgttccnnnnnnnagttttgttccatctggaaatatgtcatcttccaccacctgaag 198  Q
     ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||||||||    
T  13888723 ctttccattcttcccattgaatatattgcatatataatttttgttcctttttttagttttgttccatctggaaatgtgtcatcttccaccacctgaag 13888626  T

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Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 13895885 - 13896080
Alignment:
Q  5 aaagcagtgaatttgtacgcagattcacctatgaaatgaccatctttagttaaccatctttctggcttgaactccaagcaatcttttccccatatgtttt 104  Q
    ||||| ||||||||||| |||||||| |  ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13895885 aaagctgtgaatttgtaggcagattcgctcatgaaatgaccatcttcggttaaccatctttctggcttgaactccaagcaatcttttccccatatgtttt 13895984  T
Q  105 ccattcttcccattgaatatattgcatatataatttttgttccnnnnnnnagttttgttccatctggaaatatgtcatcttccaccacctgaagaa 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||       |||||| |||||| ||| ||| |||||||||||||||||| |||||    
T  13895985 ccattcttcccattgaatatattgcatatataacttttgttcctttctttagttttattccatttgggaatgtgtcatcttccaccacctaaagaa 13896080  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 13892932 - 13893031
Alignment:
Q  46 atctttagttaaccatctttctggcttgaactccaagcaatcttttccccatatgttttccattcttcccattgaatatattgcatatataatttttgtt 145  Q
    |||||||||||||| || |||||||||||||||| |||||||||||| || |||  |||||||||||||||| ||| | ||||||||||| | |||||||    
T  13892932 atctttagttaaccttcgttctggcttgaactccgagcaatcttttctccgtatactttccattcttcccatggaaaaaattgcatatatcacttttgtt 13893031  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 13893303 - 13893156
Alignment:
Q  1 attgaaagcagtgaatttgtacgcagattcacctatgaaatgaccatctttagttaaccatctttctggcttgaactccaagcaatctttt-ccccatat 99  Q
    |||||||||||  |||||||| | ||||| ||   ||||||| | || ||| |||||||| | || | || |||||| ||||||||||||| ||||||||    
T  13893303 attgaaagcagcaaatttgtaggaagatttactcgtgaaatggcaattttttgttaaccaccatttttgcctgaactgcaagcaatctttttccccatat 13893204  T
Q  100 gttttccattcttcccattgaatatattgcatatataatttttgttcc 147  Q
     |||||||||||||||||| |||| ||||||| ||| | |||||||||    
T  13893203 attttccattcttcccattaaataaattgcatgtatcacttttgttcc 13893156  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 13891600 - 13891676
Alignment:
Q  59 catctttctggcttgaactccaagcaatcttttccccatatgttttccattcttcccattgaatatattgcatatat 135  Q
    |||||||||||||| |||||||||||||||||||| |||||   |||||||| |||||  ||||| |||||||||||    
T  13891600 catctttctggcttaaactccaagcaatcttttccacatatacattccattcctcccacggaataaattgcatatat 13891676  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 12964018 - 12963957
Alignment:
Q  58 ccatctttctggcttgaactccaagcaatcttttccccatatgttttccattcttcccattg 119  Q
    ||||||||| ||||| || ||||||||||||| ||||||||| | |||||| ||||||||||    
T  12964018 ccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattg 12963957  T

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Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 1033877 - 1034072
Alignment:
Q  5 aaagcagtgaatttgtacgcagattcacctatgaaatgaccatctttagttaaccatctttctggcttgaactccaagcaatcttttccccatatgtttt 104  Q
    |||||||| |||||||| ||| || | |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  1033877 aaagcagtaaatttgtaggcaaatacgctcatgaaatgaccatctttagttaaccatctttctggcttgaactccaagcaatcttttcctcatatatttt 1033976  T
Q  105 ccattcttcccattgaatatattgcatatataatttttgttccnnnnnnnagttttgttccatctggaaatatgtcatcttccaccacctgaagaa 200  Q
    ||||||||||||| ||||| ||||||||||| | |||||| ||       | |||| |||||| ||| |||||||||||||||||||||| |||||    
T  1033977 ccattcttcccatggaataaattgcatatatcacttttgtccctttctttaattttattccatttgggaatatgtcatcttccaccacctaaagaa 1034072  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 28665866 - 28665987
Alignment:
Q  8 gcagtgaatttgtacgcagattcacctatgaaatgaccatctttagttaaccatctttctggcttgaactccaagcaatcttttccccatatgttttcca 107  Q
    |||||||||||||||||||||||||  || ||| ||||||||||   |||||||||||| || || |||||   ||| ||||||||||||||| ||||||    
T  28665866 gcagtgaatttgtacgcagattcactcataaaacgaccatcttt---taaccatctttcaggtttaaactctctgcagtcttttccccatatgctttcca 28665962  T
Q  108 ttcttcccattgaatatattgcata 132  Q
    |||| ||||||| ||| ||||||||    
T  28665963 ttctccccattgcataaattgcata 28665987  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 346889 - 346954
Alignment:
Q  58 ccatctttctggcttgaactccaagcaatcttttccccatatgttttccattcttcccattgaata 123  Q
    |||||| ||||||||||||||||| ||||||||||||||||| | ||| | ||| |||||||||||    
T  346889 ccatctctctggcttgaactccaaacaatcttttccccatatctcttcaaatctccccattgaata 346954  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 355548 - 355613
Alignment:
Q  58 ccatctttctggcttgaactccaagcaatcttttccccatatgttttccattcttcccattgaata 123  Q
    |||||| ||||||||||||||||| ||||||||||||||||| | ||| | ||| |||||||||||    
T  355548 ccatctctctggcttgaactccaaacaatcttttccccatatctcttcaaatctccccattgaata 355613  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 377613 - 377548
Alignment:
Q  58 ccatctttctggcttgaactccaagcaatcttttccccatatgttttccattcttcccattgaata 123  Q
    |||||| ||||||||||||||||||||||||| ||||||||| | ||| | ||| |||||||||||    
T  377613 ccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaata 377548  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 341890 - 341850
Alignment:
Q  65 tctggcttgaactccaagcaatcttttccccatatgttttc 105  Q
    |||||||| ||||||||||||||||||||||| || |||||    
T  341890 tctggcttaaactccaagcaatcttttccccaaatattttc 341850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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