View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_50 (Length: 253)
Name: NF0707_low_50
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 6123256 - 6123090
Alignment:
| Q |
53 |
cgtctctctcaactaataatcaacaaatgcccaaagttggccgacttgcctacttttccaaatgttaaagaattgcagttgtgtgaatctactgtgaagc |
152 |
Q |
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| T |
6123256 |
cgtctctctcaactaataatcaacaaatgcccaaagttgactgacttgcctacttttccaaatgttgaggaattgcagttgtgtgaatctatggtgaagc |
6123157 |
T |
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| Q |
153 |
cattggaagaaacactgaatatagcatcatcatctttatcccctcctctttccaagctcaagtcact |
219 |
Q |
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| T |
6123156 |
cattgaaagaaacactggatatagcatcatcctcttcctccgctcctctttccaagctcaagtcact |
6123090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 51 - 219
Target Start/End: Original strand, 6116180 - 6116348
Alignment:
| Q |
51 |
gtcgtctctctcaactaataatcaacaaatgcccaaagttggccgacttgcctacttttccaaatgttaaagaattgcagttgtgtgaatctactgtgaa |
150 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| | |||||||||||||||||||||| |||| |
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| T |
6116180 |
gtcgtctctctcaactaataatcaacaaatgcccagagttgactgacttgcctacttttccaaatgttgaggaattgcagttgtgtgaatctatggtgac |
6116279 |
T |
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| Q |
151 |
gccattggaagaaacactgaatatagcatcatcatctttatcccctcctctttccaagctcaagtcact |
219 |
Q |
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| T |
6116280 |
gccattgaaagaaacgctggatatagcatcatcctcttcctccactcctctttccaagctcaagtcact |
6116348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 13752586 - 13752714
Alignment:
| Q |
55 |
tctctctcaactaataatcaacaaatgcccaaagttggccgacttgcctacttttccaaatgttaaagaattgcagttgtgtgaatctactgtgaagcca |
154 |
Q |
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| T |
13752586 |
tctctctcaactaataatcaacaaatgcccaaagttgactgacttgcctacttttccaaatgttgaagaattgcagttgtgtgaatctatggtgaagcca |
13752685 |
T |
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| Q |
155 |
ttggaagaaacactgaatatagcatcatc |
183 |
Q |
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| T |
13752686 |
ttgaaagaaacaccggatatagcatcatc |
13752714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 6682865 - 6682733
Alignment:
| Q |
30 |
atctcttgttgcctcagttctgtcgtctctctcaactaataatcaacaaatgcccaaagttggccgacttgcctacttttccaaatgttaaagaattgca |
129 |
Q |
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|||||| | |||||||||| || ||||||||||| |||| ||| | ||||||||||||| | ||| ||| |||| ||||||||||| ||||| | |
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| T |
6682865 |
atctctcgctgcctcagtttcgttgtctctctcaattaatgatctatggatgcccaaagttgacttgcttacctcctttcccaaatgttaaggaatttga |
6682766 |
T |
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| Q |
130 |
gttgtgtgaatctactgtgaagccattggaaga |
162 |
Q |
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|||||||||||||| |||| |||||| |||| |
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| T |
6682765 |
attgtgtgaatctacactgaaaccattgaaaga |
6682733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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