View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_51 (Length: 252)
Name: NF0707_low_51
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_51 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3709024 - 3709270
Alignment:
| Q |
1 |
ttagacaaactcataaattgcataagcattagatatttctttggcaaaactctccaaaattatgttagtttaaagttgagttttcaaattttaatcgaat |
100 |
Q |
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| T |
3709024 |
ttagacaaactcataaattgcataagcattagatatttctttggcaaaactctccaaaattatgttagtttaaagttgagttttcaaattttaatcgaat |
3709123 |
T |
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| Q |
101 |
ttatgttcaatagtaaaccaaagcatat-----tcatctaggtattataatacataaattgggataatagtcattttggtttttgaatgtgtaacatgat |
195 |
Q |
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| T |
3709124 |
ttatgttcaatagtaaaccaaagcatattatgatcatctaggtattataatacataaattgggataatagtcattttagtttctgaatgtgtaacgtgat |
3709223 |
T |
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| Q |
196 |
tatccacaattgtccttcaatgtgccgaaatatcaaaatagtctctg |
242 |
Q |
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| T |
3709224 |
tagccacaattgtccttcaatgtgccgaaatatcaaaatagtctctg |
3709270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 29714789 - 29714760
Alignment:
| Q |
161 |
aatagtcattttggtttttgaatgtgtaac |
190 |
Q |
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| T |
29714789 |
aatagtcattttggtttttgaatgtgtaac |
29714760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 81672 - 81639
Alignment:
| Q |
157 |
ggataatagtcattttggtttttgaatgtgtaac |
190 |
Q |
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| T |
81672 |
ggataatagtcattttggtctttgaatgtgtaac |
81639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 30519042 - 30519118
Alignment:
| Q |
165 |
gtcattttggtttttgaatgtgtaacatgattatccacaattgtccttcaatgtgccgaaatatcaaaatagtctctg |
242 |
Q |
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||||||||||| |||||||||||||| || |||||||| |||||| ||||| |||||| ||||||||||||||| |
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| T |
30519042 |
gtcattttggtccttgaatgtgtaacaa-atagtccacaatagtccttaaatgtatcgaaatttcaaaatagtctctg |
30519118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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