View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_52 (Length: 251)
Name: NF0707_low_52
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_52 |
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| [»] chr1 (7 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 13889143 - 13888908
Alignment:
| Q |
16 |
atgagcattgaacatcattaacctaacaatgaacaatgataattaatttttaaacaaactatatatcatcatccttaatcacaccaacatttaatatcaa |
115 |
Q |
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| T |
13889143 |
atgagcattgaacatcattaacctaacaatgaacaatgataattaatttttaaacaaactatatatcatcatccttaatcacaccaacatttaatatcaa |
13889044 |
T |
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| Q |
116 |
ttcacttctaactaatcttcaagtatttatgaatttcttcatcacaacgcctatgaagattaacttttaatccatgtttcatgtaaagtgtcaaagaaag |
215 |
Q |
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| T |
13889043 |
ttcacttctaactaatcttcaagtatttatgaatttcttcatcacaacgcctatgaagattaacttttaatccatgtttcatgtaaagtgtcaaagaaag |
13888944 |
T |
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| Q |
216 |
cttaggaacaataaggtgattctcaacaaccttaac |
251 |
Q |
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| T |
13888943 |
cttaggaacaataaggtgattctcaacaaccttaac |
13888908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 13895560 - 13895795
Alignment:
| Q |
16 |
atgagcattgaacatcattaacctaacaatgaacaatgataattaatttttaaacaaactatatat-catcatccttaatcacaccaacatttaatatca |
114 |
Q |
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| T |
13895560 |
atgagtattgaacatcaatggcctaacaatgaacaataataattcattttaaaacaaactacatattcatcatccataatcatagcaacattcattctca |
13895659 |
T |
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| Q |
115 |
attcacttctaactaatcttcaagtatttatgaatttcttcatcacaacgcctatgaagattaacttttaatccatgtttcatgtaaagtgtcaaagaaa |
214 |
Q |
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| T |
13895660 |
attcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaacttttaatccatgcttcatgtaaagtgtcaaagcaa |
13895759 |
T |
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| Q |
215 |
gcttaggaacaataaggtgattctcaacaaccttaa |
250 |
Q |
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| T |
13895760 |
gcttaggaacaacaaggtgattttcaacaaccttaa |
13895795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 55 - 251
Target Start/End: Complemental strand, 13892013 - 13891817
Alignment:
| Q |
55 |
taattaatttttaaacaaactatatatcatcatccttaatcacaccaacatttaatatcaattcacttctaactaatcttcaagtatttatgaatttctt |
154 |
Q |
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| T |
13892013 |
taattaatttttaaacaaactatgtatcataccccttaatcataccaatatttattatcaattcacttctaactaatgtttaagtatttatgaatttttt |
13891914 |
T |
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| Q |
155 |
catcacaacgcctatgaagattaacttttaatccatgtttcatgtaaagtgtcaaagaaagcttaggaacaataaggtgattctcaacaaccttaac |
251 |
Q |
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| T |
13891913 |
catcacaacgtcgatgaagattaactttcaatccatgtttcatgtaaagtgtcaaagaaagcttaggaacaacagggtgcttctcaacaaccttaac |
13891817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 13890456 - 13890626
Alignment:
| Q |
81 |
tcatcatccttaatcacaccaacatttaatatcaattcacttctaactaatcttcaagtatttatgaatttcttcatcacaacgcctatgaagattaact |
180 |
Q |
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| T |
13890456 |
tcatcatccataatcatcacaatatttattctcaattaacatctaacttaacttcaaatatttatgagtttcttcatcacaacgcctatgaaggttaact |
13890555 |
T |
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| Q |
181 |
tttaatccatgtttcatgtaaagtgtcaaagaaagcttaggaacaataaggtgattctcaacaaccttaac |
251 |
Q |
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| T |
13890556 |
tttaatccatactttatgtaaaatgtcaaagtaagcttaggaacaacaaggtgattttcaacaaccttaac |
13890626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 13893642 - 13893486
Alignment:
| Q |
63 |
ttttaaacaaactatatatcatcatccttaatcacaccaacatttaatatcaattcacttctaactaatcttcaagtatttatgaatttcttcatcacaa |
162 |
Q |
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|||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||| ||| || ||| |||||||||||| |||||| |
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| T |
13893642 |
ttttaaacaaactatatatcatcatcct-aatcatatcaacatttattatcaattcacttctaactaaacttaaaacattcatgaatttcttcttcacaa |
13893544 |
T |
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| Q |
163 |
cgcctatgaagattaacttttaatccatgtttcatgtaaagtgtcaaagaaagcttag |
220 |
Q |
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| T |
13893543 |
catctatgaaggttaactttcaatctatgcttcacgaaaagtgtcaaagaaagtttag |
13893486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 13890335 - 13890399
Alignment:
| Q |
17 |
tgagcattgaacatcattaacctaacaatgaacaatgataattaatttttaaacaaactatatat |
81 |
Q |
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| T |
13890335 |
tgagcattgaacatcattccgctaacaatgaacaataataattcattttaaaacaaactatatat |
13890399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 13893455 - 13893388
Alignment:
| Q |
184 |
aatccatgtttcatgtaaagtgtcaaagaaagcttaggaacaataaggtgattctcaacaaccttaac |
251 |
Q |
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|||| ||| |||||||||||||||||||||||||||| | ||| | ||||||||||||||| |||||| |
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| T |
13893455 |
aatctatgcttcatgtaaagtgtcaaagaaagcttagaaccaacagggtgattctcaacaatcttaac |
13893388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 1033618 - 1033788
Alignment:
| Q |
81 |
tcatcatccttaatcacaccaacatttaatatcaattcacttctaactaatcttcaagtatttatgaatttcttcatcacaacgcctatgaagattaact |
180 |
Q |
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||||||||| |||||| | ||| ||||| | ||||||||| ||||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1033618 |
tcatcatccataatcatagcaatatttattctcaattcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaact |
1033717 |
T |
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| Q |
181 |
tttaatccatgtttcatgtaaagtgtcaaagaaagcttaggaacaataaggtgattctcaacaaccttaac |
251 |
Q |
| |
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||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
1033718 |
tttaatccatgcttcatgtaaagtgtcaaagatagcttaggaacaatagggtgattctcaacaaccttaac |
1033788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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