View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_57 (Length: 244)
Name: NF0707_low_57
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 11836308 - 11836431
Alignment:
| Q |
90 |
ggttgttagaaatggtcttagagcttcaattgttaaggcaacagttagttcatcaaaaatatggaaggactgcaaagtattgaagttgacaaagaacatg |
189 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11836308 |
ggttgttagaaatggtcctagagctgcaattgttaaggcaacagttagttcatcaaaaatatggaaggactgcaaagtattgaagttgacaaagaacatg |
11836407 |
T |
|
| Q |
190 |
aggttgaccggtgatactacaaac |
213 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
11836408 |
aggttgaccggtgatactacaaac |
11836431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 22422631 - 22422754
Alignment:
| Q |
90 |
ggttgttagaaatggtcttagagcttcaattgttaaggcaacagttagttcatcaaaaatatggaaggactgcaaagtattgaagttgacaaagaacatg |
189 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22422631 |
ggttgttagaaatggtcctagagctgcaattgttaaggcaacagttagttcatcaaaaatatggaaggactgcaaagtattgaagttgacaaagaacatg |
22422730 |
T |
|
| Q |
190 |
aggttgaccggtgatactacaaac |
213 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
22422731 |
aggttgaccggtgatactacaaac |
22422754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 19721949 - 19721826
Alignment:
| Q |
90 |
ggttgttagaaatggtcttagagcttcaattgttaaggcaacagttagttcatcaaaaatatggaaggactgcaaagtattgaagttgacaaagaacatg |
189 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19721949 |
ggttgttagaaatggtcctagagctgcaattgttaaggcaacagttagttcatcaaaaatatggaaggactgcaaagtattgaagttgacaaaaaacatg |
19721850 |
T |
|
| Q |
190 |
aggttgaccggtgatactacaaac |
213 |
Q |
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|||||||| |||||||||||||| |
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| T |
19721849 |
aggttgactagtgatactacaaac |
19721826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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