View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_low_6 (Length: 620)

Name: NF0707_low_6
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_low_6
NF0707_low_6
[»] chr7 (11 HSPs)
chr7 (30-611)||(33993587-33994167)
chr7 (30-231)||(33983914-33984115)
chr7 (280-401)||(33984271-33984392)
chr7 (459-585)||(33984477-33984600)
chr7 (308-400)||(34016098-34016190)
chr7 (111-174)||(34015438-34015501)
chr7 (503-561)||(34006199-34006257)
chr7 (503-561)||(34016363-34016421)
chr7 (107-174)||(34005579-34005646)
chr7 (340-408)||(30096372-30096440)
chr7 (308-400)||(34005965-34006057)
[»] chr6 (5 HSPs)
chr6 (90-207)||(9237379-9237496)
chr6 (491-561)||(9215879-9215949)
chr6 (90-207)||(9217871-9217988)
chr6 (287-371)||(9236481-9236565)
chr6 (493-561)||(9236273-9236341)


Alignment Details
Target: chr7 (Bit Score: 550; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 30 - 611
Target Start/End: Original strand, 33993587 - 33994167
Alignment:
Q  30 ttaatggtgcaatgacatcaatccttttggcttattggatcccaaatttgggccagcttgtttttatcatgacaaaatgtcctgatacatggaagggttt 129  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  33993587 ttaatggtgcaatgacatcaatccttttggcttattggatacccaatttgggtcagcttgtttttatcatgaccaaatgtcctgatacatggaagggttt 33993686  T
Q  130 ttcatttttggctttcaaagatctttggcctgttatcaagctttctttgtcttctggagctatgttatggtaagaatttcggtaattttcataatcaatt 229  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33993687 ttcatttttggccttcaaagatctttggcctgttatcaagctttctttgtcttctggagctatgttatggtaagaatttcagtaattttcataatcaatt 33993786  T
Q  230 tttaagattatgcatggtttgtaatcaaagtgtgtttggatgaaccataagactaacatgaagctatggttactttgacagtcttgaaatatggtacaac 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33993787 tttaagattatgcatggtttgtaatcaaagtgtgtttggatgaaccataagactaacatgaagctatggttactttgacagtcttgaaatatggtacaac 33993886  T
Q  330 acagttttgattcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggtactatatctctcattctcattcttacattt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33993887 acagttttgattcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggtactatatctctcattctcattcttacattt 33993986  T
Q  430 acttcaaaattttagcattaagattcatatttaaactaatctattgacttaatcaaattattatttttgcagcctcaacatcaatgggtgggaaatgatg 529  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33993987 acttcaaaa-tttagcattaagattcatatttaaactaatctattgacttaatcaaattattatttttgcagcctcaacatcaatgggtgggaaatgatg 33994085  T
Q  530 atagcccttggtttctttgctgcagctaggtacatcattgtgatcacaatcttattgagaagtttcttgtcagtacctatga 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994086 atagcccttggtttctttgctgcagctaggtacatcattgtgatcacaatcttattgagaagtttcttgtcagtacctatga 33994167  T

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Target: chr7; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 33983914 - 33984115
Alignment:
Q  30 ttaatggtgcaatgacatcaatccttttggcttattggatcccaaatttgggccagcttgtttttatcatgacaaaatgtcctgatacatggaagggttt 129  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  33983914 ttaatggtgcaatgacatcaatccttttggcttattggatacccaatttgggtcagcttgtttttatcatgaccaaatgtcctgatacatggaagggttt 33984013  T
Q  130 ttcatttttggctttcaaagatctttggcctgttatcaagctttctttgtcttctggagctatgttatggtaagaatttcggtaattttcataatcaatt 229  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  | ||||||  |||||||||    
T  33984014 ctcatttttggccttcaaagatctttggcctgttatcaagctttctttgtcttctggagttatgttatggtaagagtttgagcaatttttgtaatcaatt 33984113  T
Q  230 tt 231  Q
    ||    
T  33984114 tt 33984115  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 280 - 401
Target Start/End: Original strand, 33984271 - 33984392
Alignment:
Q  280 gactaacatgaagctatggttactttgacagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgagatttccat 379  Q
    ||||||||| ||  ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33984271 gactaacataaatttatggttccttttacagtcttgaaatatggtacaacacagttttgattcttctaacaggaaacatggaaaatgctgagatttccat 33984370  T
Q  380 tgatgctcttgctatatggtac 401  Q
     ||||||||  | |||||||||    
T  33984371 agatgctctatccatatggtac 33984392  T

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Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 459 - 585
Target Start/End: Original strand, 33984477 - 33984600
Alignment:
Q  459 tttaaactaatctattgacttaatcaaattattatttt-tgcagcctcaacatcaatgggtgggaaatgatgatagcccttggtttctttgctgcagcta 557  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||||     
T  33984477 tttaaactaatttattgatttaatcaaattatcattttttgcagcctcaacatcaatggcttggaaacgatgatagccctaggtttctttgctgcagctg 33984576  T
Q  558 ggtacatcattgtgatcacaatcttatt 585  Q
    ||||    |||||||||||||| |||||    
T  33984577 ggta----attgtgatcacaattttatt 33984600  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 34016098 - 34016190
Alignment:
Q  308 cagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggta 400  Q
    |||||||||  ||||||||||||| || ||||||||| ||||||| |||||||||||||| ||||||   ||||||||||| || ||||||||    
T  34016098 cagtcttgagctatggtacaacacggtattgattcttttaacaggcaacatggaaaatgcagagattcaaattgatgctctagccatatggta 34016190  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 34015438 - 34015501
Alignment:
Q  111 ctgatacatggaagggtttttcatttttggctttcaaagatctttggcctgttatcaagctttc 174  Q
    ||||||| ||||| ||||| |||||||| |||||| ||||||||||||||||| ||||||||||    
T  34015438 ctgatacttggaaaggtttctcatttttagctttccaagatctttggcctgttgtcaagctttc 34015501  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 561
Target Start/End: Original strand, 34006199 - 34006257
Alignment:
Q  503 ctcaacatcaatgggtgggaaatgatgatagcccttggtttctttgctgcagctaggta 561  Q
    |||||||||||||| ||||||||||||||| | ||||||||| | |||||||| |||||    
T  34006199 ctcaacatcaatggatgggaaatgatgatatcacttggtttcatggctgcagcaaggta 34006257  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 561
Target Start/End: Original strand, 34016363 - 34016421
Alignment:
Q  503 ctcaacatcaatgggtgggaaatgatgatagcccttggtttctttgctgcagctaggta 561  Q
    |||||||||||||| ||||||||||||||| | ||||||||| | |||||||| |||||    
T  34016363 ctcaacatcaatggatgggaaatgatgatatcacttggtttcatggctgcagcaaggta 34016421  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 34005579 - 34005646
Alignment:
Q  107 tgtcctgatacatggaagggtttttcatttttggctttcaaagatctttggcctgttatcaagctttc 174  Q
    |||||||| || ||||| ||||| |||||||| || |||||||| |||||||||||| |||| |||||    
T  34005579 tgtcctgaaacttggaatggtttctcatttttagcattcaaagacctttggcctgttgtcaaactttc 34005646  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 340 - 408
Target Start/End: Original strand, 30096372 - 30096440
Alignment:
Q  340 ttcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggtactatatct 408  Q
    |||||||||| |  ||||||||| ||||| |||||||| |||||||||   | ||||||||||||||||    
T  30096372 ttcttctaaccgaaaacatggaagatgctaagatttccgttgatgctcggaccatatggtactatatct 30096440  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 34005965 - 34006057
Alignment:
Q  308 cagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggta 400  Q
    |||||||||  |||||||||||||| | ||| ||||| | |||||||||||| ||||||| ||| ||   |||||||| ||  ||||||||||    
T  34005965 cagtcttgagctatggtacaacacaatattggttcttttgacagggaacatgaaaaatgcagaggttgaaattgatgcactatctatatggta 34006057  T

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Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 9237496 - 9237379
Alignment:
Q  90 tttttatcatgacaaaatgtcctgatacatggaagggtttttcatttttggctttcaaagatctttggcctgttatcaagctttctttgtcttctggagc 189  Q
    |||| ||||||| ||||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||| | ||||| ||| | || |||||||     
T  9237496 ttttcatcatgaaaaaatgtcctgatacttggaagggtttctcaatattggctttcaaagatctttggcctgttgtaaagctctctgtctcatctggagt 9237397  T
Q  190 tatgttatggtaagaatt 207  Q
     ||||| |||||||||||    
T  9237396 catgttgtggtaagaatt 9237379  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 491 - 561
Target Start/End: Complemental strand, 9215949 - 9215879
Alignment:
Q  491 tatttttgcagcctcaacatcaatgggtgggaaatgatgatagcccttggtttctttgctgcagctaggta 561  Q
    |||||||||||||| ||||||||||| |||||||||||||| |||||||| || |||||||||||||||||    
T  9215949 tatttttgcagcctaaacatcaatggttgggaaatgatgattgcccttggcttttttgctgcagctaggta 9215879  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 9217988 - 9217871
Alignment:
Q  90 tttttatcatgacaaaatgtcctgatacatggaagggtttttcatttttggctttcaaagatctttggcctgttatcaagctttctttgtcttctggagc 189  Q
    |||| ||||||| |||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||| ||| | ||||  ||||| || ||||||      
T  9217988 ttttcatcatgaaaaaatgtcctgaaacttggaagggtttctcaattttggctttcaaagatctttggccagttgtgaagcaatctttctcatctggaat 9217889  T
Q  190 tatgttatggtaagaatt 207  Q
     ||||| |||||||||||    
T  9217888 catgttgtggtaagaatt 9217871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 371
Target Start/End: Complemental strand, 9236565 - 9236481
Alignment:
Q  287 atgaagctatggttactttgacagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgag 371  Q
    |||||| |||| || |||| ||||||||||  ||||||||| |||| ||||||||||| |||| || |||||| || ||||||||    
T  9236565 atgaagttatgattccttttacagtcttgaggtatggtacagcacaattttgattcttttaactggcaacatgaaagatgctgag 9236481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 561
Target Start/End: Complemental strand, 9236341 - 9236273
Alignment:
Q  493 tttttgcagcctcaacatcaatgggtgggaaatgatgatagcccttggtttctttgctgcagctaggta 561  Q
    |||||||||||| || |||| ||| |||||| ||||||| ||||| || || |||||||||||| ||||    
T  9236341 tttttgcagcctaaatatcagtggttgggaattgatgattgccctagggttttttgctgcagctgggta 9236273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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