View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_61 (Length: 238)
Name: NF0707_low_61
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 41286787 - 41286571
Alignment:
| Q |
10 |
gagatgaagaatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatactagtatctgc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
41286787 |
gagatgaagaatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatatcattatctgc |
41286688 |
T |
|
| Q |
110 |
ttggaaaaggaacaaatgcaaatattagaaatgaggtatgatgggaacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |
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| T |
41286687 |
ttggaaaaggaacaaatgcaaatattagaaatgaggtatgatgggaacctccacaaccaggtctttgtgaaattgaatgt---tggaagttgtaactctc |
41286591 |
T |
|
| Q |
210 |
gtggagggattggtgatgat |
229 |
Q |
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||||||||||||||||||| |
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| T |
41286590 |
atggagggattggtgatgat |
41286571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 1556991 - 1556787
Alignment:
| Q |
19 |
aatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatactagtatctgcttggaaaag |
118 |
Q |
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||||||||||||||||||| |||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||| | | ||||| |||||||||| |
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| T |
1556991 |
aatcataggatcctaggtgacaaccaatggaagaagtatgatgtgcttaggtacattcatactttgcatgaggatatagatcattatctccttggaaaag |
1556892 |
T |
|
| Q |
119 |
gaacaaatgcaaatattagaaatgaggtatgatgggaacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctcgtggaggga |
218 |
Q |
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| T |
1556891 |
gaacatatgcaaatattagaaaagaggtgagatgggaacctccacaaccaggtc-ttgtgaaattgaatgtggatggaagttgcaactctggtggaggga |
1556793 |
T |
|
| Q |
219 |
ttggtg |
224 |
Q |
| |
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|||||| |
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|
| T |
1556792 |
ttggtg |
1556787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 50544946 - 50544881
Alignment:
| Q |
158 |
ctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctcgtggagggattggtg |
224 |
Q |
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| T |
50544946 |
ctccacaaccaggtctt-gtgaaattgaatgttgatggaagttgcaactctcgtggagggattggtg |
50544881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 48478360 - 48478564
Alignment:
| Q |
19 |
aatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatactagtatctgcttggaaaag |
118 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||| | | ||||| || || |||| |
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| T |
48478360 |
aatcataggatcctaggtgacaaccaatggaagaagtatgatgtgcttaggtacattcatactttgcatgaggatatagatcattatctcctggggaaag |
48478459 |
T |
|
| Q |
119 |
gaacaaatgcaaatattagaaatgaggtatgatgggaacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctcgtggaggga |
218 |
Q |
| |
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||||| ||||||| |||||||| ||||| ||||||||||| ||||| |||||| |||||||||||||||| |||||||||| |||||||| |||||||| |
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| T |
48478460 |
gaacatatgcaaagattagaaaagaggtgcgatgggaaccttcacaaccaggtc-ttgtgaaattgaatgtggatggaagttgcaactctcatggaggga |
48478558 |
T |
|
| Q |
219 |
ttggtg |
224 |
Q |
| |
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|||||| |
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|
| T |
48478559 |
ttggtg |
48478564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 9965971 - 9966048
Alignment:
| Q |
19 |
aatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatata |
96 |
Q |
| |
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||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
9965971 |
aatcataggatcctaggtgacaaccaatggaagaagtatgatgtgcttagatacattcatactttgcatgaggatata |
9966048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 9966059 - 9966131
Alignment:
| Q |
148 |
tgatgggaacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctcgtggagggattg |
221 |
Q |
| |
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|||| |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9966059 |
tgataggaacctccataaccaggtctt-gtgaaattgaatgttgatggaagttacaactctcgtggaaggattg |
9966131 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 11347945 - 11347761
Alignment:
| Q |
21 |
tcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatactagtatctgcttggaaaagga |
120 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||| ||| | | ||||||||||||||||| |||||| | ||||| | | ||||||||| |||||| |
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| T |
11347945 |
tcatagaatcctaggtgacaaccaatggaagaagtataatatacttagatacattcatacattgcattagaatatagatcatcatctgcttgacaaagga |
11347846 |
T |
|
| Q |
121 |
acaaatgcaaatattagaaatgaggtatgatgggaacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaact |
206 |
Q |
| |
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|||||| || |||||||| ||||| ||||| |||||||||| ||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
11347845 |
acaaataataagattagaaaggaggtgcgatggccacctccacaacaaggtctt-gtgaaatcgaatgttgatggaagttgcaact |
11347761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 10414687 - 10414733
Alignment:
| Q |
174 |
ttgtgaaattgaatgttgatggaagttacaactctcgtggagggatt |
220 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10414687 |
ttgtgaaattgaatgttgatggaagttgcaactctcgtggagggatt |
10414733 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 36343693 - 36343581
Alignment:
| Q |
19 |
aatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatactagtatctgcttggaaaag |
118 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||| ||||| |||||| | ||||||||||| |||| ||| |||||| | | ||||||||||| |||| |
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|
| T |
36343693 |
aatcataggatcctaggtgacaatcaatg-aagaagtatgatgtgctttggtacattcatacgttgcgtgaggatataaatcattatctgcttggcaaag |
36343595 |
T |
|
| Q |
119 |
gaacaaatgcaaat |
132 |
Q |
| |
|
|||||||||||||| |
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|
| T |
36343594 |
gaacaaatgcaaat |
36343581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 33978989 - 33979065
Alignment:
| Q |
20 |
atcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatata |
96 |
Q |
| |
|
|||||||||||||| ||| || || |||||||| ||||| ||||||||||||||||||||||| ||||| |||||| |
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|
| T |
33978989 |
atcataggatcctaagtgacattcaatggaagaaatatgatgtgcttagatacattcatacttttcatgaggatata |
33979065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 33979107 - 33979180
Alignment:
| Q |
155 |
aacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctcgtggagggattggtgatgat |
229 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||||||||| ||||||| ||||||||||| | |||||| |
|
|
| T |
33979107 |
aacctccacaactaggtctt-gtaaaattgaatgttgatggaagttgcaactcttgtggagggattagggatgat |
33979180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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