View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_low_64 (Length: 231)

Name: NF0707_low_64
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_low_64
NF0707_low_64
[»] chr4 (3 HSPs)
chr4 (14-223)||(41286571-41286777)
chr4 (19-223)||(1556787-1556990)
chr4 (19-85)||(50544881-50544946)
[»] chr1 (1 HSPs)
chr1 (19-223)||(48478361-48478564)
[»] chr7 (2 HSPs)
chr7 (147-223)||(9965972-9966048)
chr7 (22-95)||(9966059-9966131)
[»] chr6 (2 HSPs)
chr6 (37-222)||(11347761-11347945)
chr6 (23-69)||(10414687-10414733)
[»] chr5 (1 HSPs)
chr5 (111-223)||(36343581-36343692)
[»] chr2 (2 HSPs)
chr2 (147-225)||(33978987-33979065)
chr2 (14-88)||(33979107-33979180)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 41286571 - 41286777
Alignment:
Q  14 atcatcaccaatccctccacgagagttgtaacttccatcaacattcaatttcacaaagacctgattgtggaggttcccatcatacctcatttctaatatt 113  Q
    ||||||||||||||||||| |||||||  ||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41286571 atcatcaccaatccctccatgagagttacaacttcca---acattcaatttcacaaagacctggttgtggaggttcccatcatacctcatttctaatatt 41286667  T
Q  114 tgcatttgttccttttccaagcagatactagtatatatcatcatgcagagtatgaatgtatctaagcacgtcataattcttccactggttgccacctagg 213  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41286668 tgcatttgttccttttccaagcagataatgatatatatcatcatgcaaagtatgaatgtatctaagcacgtcataattcttccactggttgccacctagg 41286767  T
Q  214 atcctatgat 223  Q
    ||||||||||    
T  41286768 atcctatgat 41286777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 1556787 - 1556990
Alignment:
Q  19 caccaatccctccacgagagttgtaacttccatcaacattcaatttcacaaagacctgattgtggaggttcccatcatacctcatttctaatatttgcat 118  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||||  ||||| ||||||||||||||||    
T  1556787 caccaatccctccaccagagttgcaacttccatccacattcaatttcacaa-gacctggttgtggaggttcccatctcacctcttttctaatatttgcat 1556885  T
Q  119 ttgttccttttccaagcagatactagtatatatcatcatgcagagtatgaatgtatctaagcacgtcataattcttccactggttgccacctaggatcct 218  Q
     ||||||||||||||| ||||| |  | |||||| ||||||| |||||||||||| |||||||| ||||| |||||||| |||||| |||||||||||||    
T  1556886 atgttccttttccaaggagataatgatctatatcctcatgcaaagtatgaatgtacctaagcacatcatacttcttccattggttgtcacctaggatcct 1556985  T
Q  219 atgat 223  Q
    |||||    
T  1556986 atgat 1556990  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 50544881 - 50544946
Alignment:
Q  19 caccaatccctccacgagagttgtaacttccatcaacattcaatttcacaaagacctgattgtggag 85  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  50544881 caccaatccctccacgagagttgcaacttccatcaacattcaatttcac-aagacctggttgtggag 50544946  T

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Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 48478564 - 48478361
Alignment:
Q  19 caccaatccctccacgagagttgtaacttccatcaacattcaatttcacaaagacctgattgtggaggttcccatcatacctcatttctaatatttgcat 118  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||||| |||||| ||||| |||||||||||  ||||| |||||||| |||||||    
T  48478564 caccaatccctccatgagagttgcaacttccatccacattcaatttcacaa-gacctggttgtgaaggttcccatcgcacctcttttctaatctttgcat 48478466  T
Q  119 ttgttccttttccaagcagatactagtatatatcatcatgcagagtatgaatgtatctaagcacgtcataattcttccactggttgccacctaggatcct 218  Q
     ||||||||| || || ||||| |  | |||||| ||||||| |||||||||||| |||||||| ||||| |||||||| |||||| |||||||||||||    
T  48478465 atgttcctttccccaggagataatgatctatatcctcatgcaaagtatgaatgtacctaagcacatcatacttcttccattggttgtcacctaggatcct 48478366  T
Q  219 atgat 223  Q
    |||||    
T  48478365 atgat 48478361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 9966048 - 9965972
Alignment:
Q  147 tatatcatcatgcagagtatgaatgtatctaagcacgtcataattcttccactggttgccacctaggatcctatgat 223  Q
    |||||| ||||||| ||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||||    
T  9966048 tatatcctcatgcaaagtatgaatgtatctaagcacatcatacttcttccattggttgtcacctaggatcctatgat 9965972  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 9966131 - 9966059
Alignment:
Q  22 caatccctccacgagagttgtaacttccatcaacattcaatttcacaaagacctgattgtggaggttcccatca 95  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||    
T  9966131 caatccttccacgagagttgtaacttccatcaacattcaatttcac-aagacctggttatggaggttcctatca 9966059  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 11347761 - 11347945
Alignment:
Q  37 agttgtaacttccatcaacattcaatttcacaaagacctgattgtggaggttcccatcatacctcatttctaatatttgcatttgttccttttccaagca 136  Q
    ||||| ||||||||||||||||| ||||||| |||||||  ||||||||||  |||||  ||||| |||||||| ||   ||||||||||||  ||||||    
T  11347761 agttgcaacttccatcaacattcgatttcac-aagaccttgttgtggaggtggccatcgcacctcctttctaatcttattatttgttcctttgtcaagca 11347859  T
Q  137 gatactagtatatatcatcatgcagagtatgaatgtatctaagcacgtcataattcttccactggttgccacctaggatcctatga 222  Q
    |||  |  | |||||  | |||||  ||||||||||||||||| |  | ||| |||||||| |||||| |||||||||| ||||||    
T  11347860 gatgatgatctatattctaatgcaatgtatgaatgtatctaagtatattatacttcttccattggttgtcacctaggattctatga 11347945  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 10414733 - 10414687
Alignment:
Q  23 aatccctccacgagagttgtaacttccatcaacattcaatttcacaa 69  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  10414733 aatccctccacgagagttgcaacttccatcaacattcaatttcacaa 10414687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 36343581 - 36343692
Alignment:
Q  111 atttgcatttgttccttttccaagcagatactagtatatatcatcatgcagagtatgaatgtatctaagcacgtcataattcttccactggttgccacct 210  Q
    |||||||||||||||||| ||||||||||| |  | |||||| ||| |||  ||||||||||| | |||||| ||||| ||||| || || ||| |||||    
T  36343581 atttgcatttgttcctttgccaagcagataatgatttatatcctcacgcaacgtatgaatgtaccaaagcacatcatacttctt-cattgattgtcacct 36343679  T
Q  211 aggatcctatgat 223  Q
    |||||||||||||    
T  36343680 aggatcctatgat 36343692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 33979065 - 33978987
Alignment:
Q  147 tatatcatcatgcagagtatgaatgtatctaagcacgtcataattcttccactggttgccacctaggatcctatgatac 225  Q
    |||||| ||||| | ||||||||||||||||||||| ||||| |||||||| ||  || ||| ||||||||||||||||    
T  33979065 tatatcctcatgaaaagtatgaatgtatctaagcacatcatatttcttccattgaatgtcacttaggatcctatgatac 33978987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 33979180 - 33979107
Alignment:
Q  14 atcatcaccaatccctccacgagagttgtaacttccatcaacattcaatttcacaaagacctgattgtggaggtt 88  Q
    |||||| | ||||||||||| ||||||| |||||||||||||||||||||| || |||||||  |||||||||||    
T  33979180 atcatccctaatccctccacaagagttgcaacttccatcaacattcaattttac-aagacctagttgtggaggtt 33979107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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