View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_low_65 (Length: 211)

Name: NF0707_low_65
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_low_65
NF0707_low_65
[»] chr4 (3 HSPs)
chr4 (19-194)||(1556810-1556985)
chr4 (19-184)||(41286606-41286772)
chr4 (152-194)||(50544904-50544946)
[»] chr1 (1 HSPs)
chr1 (19-194)||(48478366-48478541)
[»] chr6 (2 HSPs)
chr6 (22-194)||(11347766-11347938)
chr6 (157-194)||(10414677-10414714)
[»] chr7 (2 HSPs)
chr7 (19-99)||(9965977-9966057)
chr7 (148-193)||(9966065-9966110)
[»] chr5 (1 HSPs)
chr5 (19-125)||(36343582-36343687)
[»] chr2 (2 HSPs)
chr2 (19-106)||(33978994-33979081)
chr2 (136-194)||(33979094-33979152)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 1556985 - 1556810
Alignment:
Q  19 aggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttggcaaaggaacaa 118  Q
    |||||||||||||||||||||| ||||||||| || |||||||| || ||||||||||||||||||||||||||||||||| | ||||| |||||||||     
T  1556985 aggatcctaggtgacaaccaatggaagaagtatgatgtgcttaggtacattcatactttgcatgaggatatagatcattatctccttggaaaaggaacat 1556886  T
Q  119 atgcaaagattataaatgaggtgtgatgtgaacctccacaaccaggtcttgtgaatttgaatgttgatggaagttg 194  Q
    ||||||| |||| ||| |||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  1556885 atgcaaatattagaaaagaggtgagatgggaacctccacaaccaggtcttgtgaaattgaatgtggatggaagttg 1556810  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 41286772 - 41286606
Alignment:
Q  19 aggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttggcaaaggaacaa 118  Q
    ||||||||||||| |||||| | |||||| || |||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||| ||||||||||    
T  41286772 aggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatatcattatctgcttggaaaaggaacaa 41286673  T
Q  119 atgcaaagattataaatgaggtgtgatgtgaacctccacaaccaggtc-ttgtgaatttgaatgttg 184  Q
    ||||||| |||| ||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||    
T  41286672 atgcaaatattagaaatgaggtatgatgggaacctccacaaccaggtctttgtgaaattgaatgttg 41286606  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 50544946 - 50544904
Alignment:
Q  152 ctccacaaccaggtcttgtgaatttgaatgttgatggaagttg 194  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  50544946 ctccacaaccaggtcttgtgaaattgaatgttgatggaagttg 50544904  T

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Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 48478366 - 48478541
Alignment:
Q  19 aggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttggcaaaggaacaa 118  Q
    |||||||||||||||||||||| ||||||||| || |||||||| || ||||||||||||||||||||||||||||||||| | || || |||||||||     
T  48478366 aggatcctaggtgacaaccaatggaagaagtatgatgtgcttaggtacattcatactttgcatgaggatatagatcattatctcctggggaaaggaacat 48478465  T
Q  119 atgcaaagattataaatgaggtgtgatgtgaacctccacaaccaggtcttgtgaatttgaatgttgatggaagttg 194  Q
    |||||||||||| ||| |||||| |||| |||||| ||||||||||||||||||| |||||||| |||||||||||    
T  48478466 atgcaaagattagaaaagaggtgcgatgggaaccttcacaaccaggtcttgtgaaattgaatgtggatggaagttg 48478541  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 11347938 - 11347766
Alignment:
Q  22 atcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttggcaaaggaacaaatg 121  Q
    ||||||||||||||||||| |||||||||  |  | |||||||| |||||||| |||||| || ||||||||||| || |||||| |||||||||||||     
T  11347938 atcctaggtgacaaccaatggaagaagtataatatacttagatacattcatacattgcattagaatatagatcatcatctgcttgacaaaggaacaaata 11347839  T
Q  122 caaagattataaatgaggtgtgatgtgaacctccacaaccaggtcttgtgaatttgaatgttgatggaagttg 194  Q
      ||||||| ||| |||||| ||||   ||||||||||| |||||||||||| | ||||||||||||||||||    
T  11347838 ataagattagaaaggaggtgcgatggccacctccacaacaaggtcttgtgaaatcgaatgttgatggaagttg 11347766  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 10414677 - 10414714
Alignment:
Q  157 caaccaggtcttgtgaatttgaatgttgatggaagttg 194  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  10414677 caaccatgtcttgtgaaattgaatgttgatggaagttg 10414714  T

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Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 9965977 - 9966057
Alignment:
Q  19 aggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattat 99  Q
    |||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||    
T  9965977 aggatcctaggtgacaaccaatggaagaagtatgatgtgcttagatacattcatactttgcatgaggatatagatcattat 9966057  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 9966065 - 9966110
Alignment:
Q  148 gaacctccacaaccaggtcttgtgaatttgaatgttgatggaagtt 193  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||    
T  9966065 gaacctccataaccaggtcttgtgaaattgaatgttgatggaagtt 9966110  T

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Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 36343687 - 36343582
Alignment:
Q  19 aggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttggcaaaggaacaa 118  Q
    ||||||||||||||||| |||| ||||||||| || |||||| | || |||||||| |||| |||||||||| |||||||| ||||||||||||||||||    
T  36343687 aggatcctaggtgacaatcaat-gaagaagtatgatgtgctttggtacattcatacgttgcgtgaggatataaatcattatctgcttggcaaaggaacaa 36343589  T
Q  119 atgcaaa 125  Q
    |||||||    
T  36343588 atgcaaa 36343582  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 33978994 - 33979081
Alignment:
Q  19 aggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttg 106  Q
    ||||||||| ||||||  |||| |||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  33978994 aggatcctaagtgacattcaatggaagaaatatgatgtgcttagatacattcatacttttcatgaggatatagatcattatctgcttg 33979081  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 33979094 - 33979152
Alignment:
Q  136 gaggtgtgatgtgaacctccacaaccaggtcttgtgaatttgaatgttgatggaagttg 194  Q
    |||||| ||||  |||||||||||| ||||||||| || ||||||||||||||||||||    
T  33979094 gaggtgcgatgacaacctccacaactaggtcttgtaaaattgaatgttgatggaagttg 33979152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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