View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0707_low_75 (Length: 203)
Name: NF0707_low_75
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0707_low_75 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 3859751 - 3859925
Alignment:
| Q |
29 |
agcaggctggatggttagtgatttctttgttgtttctcaaatagttatatataaggcaaatagtaattttcgtctttgaatgggtaacgaatagccacca |
128 |
Q |
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| T |
3859751 |
agcaggctggatggttagtgatttctttgttgtttctcaaatagttatatataaggcaaatagtaattttcgtctttgaatgggtaacgaatagccacca |
3859850 |
T |
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| Q |
129 |
tagttctttaattagcgaaaatacaaaatagtctctgattgtgccatttaatagtcaaaatagtctttgatgtta |
203 |
Q |
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| T |
3859851 |
tagttctttaattagcgaaaatacaaaatagtctctgattgtgccatttaatagtcaaaatagtatttgacgtta |
3859925 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 27001183 - 27001234
Alignment:
| Q |
152 |
caaaatagtctctgattgtgccatttaatagtcaaaatagtctttgatgtta |
203 |
Q |
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| T |
27001183 |
caaaatagtctatgattgtgcaatttgttagtcaaaatagtctttgatgtta |
27001234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 5529674 - 5529719
Alignment:
| Q |
153 |
aaaatagtctctgattgtgccatttaatagtcaaaatagtctttga |
198 |
Q |
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| T |
5529674 |
aaaatagtctctgattgtgcgatttgttagtcaaaatagtctttga |
5529719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 27900687 - 27900732
Alignment:
| Q |
153 |
aaaatagtctctgattgtgccatttaatagtcaaaatagtctttga |
198 |
Q |
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| T |
27900687 |
aaaatagtccctgattgtgcactctaatagtcaaaatagtctttga |
27900732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 30050699 - 30050591
Alignment:
| Q |
87 |
aatagtaattttcgtctttgaatgggtaacgaatagccaccatagttctttaat-tagcgaaaatacaaaatagtctctgattgtgccatttaatagtca |
185 |
Q |
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|||||| ||||| |||||||||| |||| || |||||| ||||| | ||||| || ||||| | ||||||||||| ||||| ||| |||| |||||| |
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| T |
30050699 |
aatagttattttggtctttgaatttgtaatgattagccaaaatagtcccttaatgtatcgaaatttcaaaatagtctatgattatgcaatttgttagtca |
30050600 |
T |
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| Q |
186 |
aaatagtct |
194 |
Q |
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| T |
30050599 |
aaatagtct |
30050591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 12849759 - 12849710
Alignment:
| Q |
150 |
tacaaaatagtctctgattgtgccatttaatagtcaaaatagtctttgat |
199 |
Q |
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||||||||||||||||||||||| ||| ||||| |||||||||||||| |
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| T |
12849759 |
tacaaaatagtctctgattgtgcactttgttagtcgaaatagtctttgat |
12849710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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