View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0707_low_9 (Length: 603)

Name: NF0707_low_9
Description: NF0707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0707_low_9
NF0707_low_9
[»] chr3 (2 HSPs)
chr3 (406-449)||(2411287-2411330)
chr3 (314-347)||(19679249-19679282)
[»] chr7 (1 HSPs)
chr7 (314-349)||(24363519-24363554)
[»] chr6 (1 HSPs)
chr6 (250-287)||(738659-738696)
[»] chr5 (1 HSPs)
chr5 (313-342)||(16944907-16944936)
[»] scaffold0393 (1 HSPs)
scaffold0393 (407-447)||(13671-13710)
[»] chr4 (1 HSPs)
chr4 (314-350)||(22796771-22796807)
[»] chr1 (1 HSPs)
chr1 (314-350)||(29045851-29045887)


Alignment Details
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 2411330 - 2411287
Alignment:
Q  406 tatgttttacactacgtggtgtatcatagcacccaaaaaactta 449  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  2411330 tatgttttacactacatggtgtatcatagcacccaaaaaactta 2411287  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 19679282 - 19679249
Alignment:
Q  314 tgctagtagataaactcaaataacacaatccaaa 347  Q
    |||||||||||||||||||||||| |||||||||    
T  19679282 tgctagtagataaactcaaataacccaatccaaa 19679249  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 24363554 - 24363519
Alignment:
Q  314 tgctagtagataaactcaaataacacaatccaaaca 349  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24363554 tgctagtagataaactcaaataaaacaatccaaaca 24363519  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 738696 - 738659
Alignment:
Q  250 agtttctggacacatcataagttgttttcataaactct 287  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  738696 agtttatggacacgtcataagttgttttcataaactct 738659  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 342
Target Start/End: Complemental strand, 16944936 - 16944907
Alignment:
Q  313 gtgctagtagataaactcaaataacacaat 342  Q
    ||||||||||||||||||||||||||||||    
T  16944936 gtgctagtagataaactcaaataacacaat 16944907  T

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Target: scaffold0393 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 13710 - 13671
Alignment:
Q  407 atgttttacactacgtggtgtatcatagcacccaaaaaact 447  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  13710 atgttttacactacatggtgtatcata-cacccaaaaaact 13671  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 22796771 - 22796807
Alignment:
Q  314 tgctagtagataaactcaaataacacaatccaaacaa 350  Q
    |||||||||||||||||||||||  ||||||||||||    
T  22796771 tgctagtagataaactcaaataaatcaatccaaacaa 22796807  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 29045887 - 29045851
Alignment:
Q  314 tgctagtagataaactcaaataacacaatccaaacaa 350  Q
    |||||||||||||||||||||||  ||||||||||||    
T  29045887 tgctagtagataaactcaaataagtcaatccaaacaa 29045851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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