View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0708_high_12 (Length: 259)

Name: NF0708_high_12
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0708_high_12
NF0708_high_12
[»] chr3 (10 HSPs)
chr3 (29-245)||(20807023-20807246)
chr3 (156-202)||(2201094-2201140)
chr3 (157-199)||(2865718-2865760)
chr3 (156-202)||(32555039-32555085)
chr3 (147-193)||(51197785-51197831)
chr3 (156-193)||(19679386-19679423)
chr3 (156-193)||(35450565-35450602)
chr3 (157-202)||(36139844-36139889)
chr3 (156-224)||(30956684-30956752)
chr3 (156-224)||(30972496-30972564)
[»] chr1 (12 HSPs)
chr1 (156-245)||(5421978-5422067)
chr1 (156-193)||(7218132-7218169)
chr1 (156-193)||(25006092-25006129)
chr1 (156-187)||(11218003-11218034)
chr1 (156-223)||(36151563-36151630)
chr1 (156-223)||(49255146-49255213)
chr1 (156-238)||(15515471-15515553)
chr1 (156-202)||(27738238-27738284)
chr1 (156-202)||(30371114-30371160)
chr1 (156-193)||(17269225-17269262)
chr1 (156-193)||(37295776-37295813)
chr1 (156-192)||(25005855-25005891)
[»] chr6 (9 HSPs)
chr6 (156-203)||(415269-415316)
chr6 (152-193)||(33828621-33828662)
chr6 (150-193)||(5550107-5550150)
chr6 (156-223)||(9093614-9093681)
chr6 (156-202)||(20671923-20671969)
chr6 (156-202)||(31671132-31671178)
chr6 (156-193)||(4006689-4006726)
chr6 (156-193)||(6310282-6310319)
chr6 (161-202)||(24836262-24836303)
[»] chr5 (6 HSPs)
chr5 (156-192)||(10272489-10272525)
chr5 (157-202)||(42181151-42181196)
chr5 (156-206)||(2568619-2568670)
chr5 (156-186)||(6587165-6587195)
chr5 (156-202)||(12425537-12425583)
chr5 (156-194)||(13244540-13244578)
[»] chr8 (7 HSPs)
chr8 (148-202)||(3537081-3537135)
chr8 (163-229)||(11000626-11000692)
chr8 (156-202)||(24558819-24558865)
chr8 (156-202)||(34770858-34770904)
chr8 (156-188)||(9834847-9834879)
chr8 (161-193)||(10218915-10218947)
chr8 (156-192)||(12361168-12361204)
[»] chr2 (13 HSPs)
chr2 (156-202)||(11513864-11513910)
chr2 (167-223)||(35459855-35459911)
chr2 (156-202)||(22681243-22681289)
chr2 (156-202)||(25609762-25609808)
chr2 (156-193)||(1625875-1625912)
chr2 (164-193)||(1899916-1899945)
chr2 (156-193)||(9750921-9750958)
chr2 (156-193)||(33944580-33944617)
chr2 (156-193)||(35755560-35755597)
chr2 (156-193)||(37766773-37766810)
chr2 (156-193)||(42907334-42907371)
chr2 (156-192)||(40158694-40158730)
chr2 (157-193)||(43199852-43199888)
[»] scaffold0475 (1 HSPs)
scaffold0475 (157-198)||(11814-11855)
[»] chr4 (9 HSPs)
chr4 (157-202)||(13949903-13949948)
chr4 (159-202)||(47119026-47119069)
chr4 (156-202)||(25885825-25885871)
chr4 (150-192)||(47946174-47946216)
chr4 (156-193)||(10192259-10192296)
chr4 (156-193)||(27043888-27043925)
chr4 (156-193)||(49219114-49219151)
chr4 (158-202)||(4071848-4071892)
chr4 (152-192)||(30581731-30581771)
[»] chr7 (12 HSPs)
chr7 (156-223)||(1417209-1417276)
chr7 (156-223)||(45813238-45813305)
chr7 (156-202)||(946718-946764)
chr7 (156-202)||(12110326-12110372)
chr7 (156-202)||(30180017-30180063)
chr7 (156-202)||(38010680-38010726)
chr7 (156-193)||(24895331-24895368)
chr7 (156-193)||(24909639-24909676)
chr7 (158-223)||(28613594-28613659)
chr7 (156-193)||(30496679-30496716)
chr7 (157-193)||(18516308-18516344)
chr7 (157-201)||(44917595-44917639)
[»] scaffold0024 (1 HSPs)
scaffold0024 (156-202)||(27542-27588)
[»] scaffold0652 (1 HSPs)
scaffold0652 (152-181)||(3003-3032)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 29 - 245
Target Start/End: Complemental strand, 20807246 - 20807023
Alignment:
Q  29 aagatggaaaatgtacatgtgaaatatttaatttacttgttgtgtttggattggtttatttaaaagcttatctaatatcataaccatttatagcttatat 128  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20807246 aagatggaaaatgtacatgtgaaatatttaatttacttgttatgtttggattggtttatttaaaagcttatctaatatcataaccatttatagcttatat 20807147  T
Q  129 catatgttttctaggatgacttatat-------taaaacaacttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagctt 221  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20807146 catatgttttctaggatgacttatattaaatattaaaacaacttatagcttatacgaaaacagtttgactttgatttatctcttggcatgtaaatagctt 20807047  T
Q  222 atgataagtatttatatatgataa 245  Q
    ||||||||||||||||||||||||    
T  20807046 atgataagtatttatatatgataa 20807023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 2201140 - 2201094
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||| ||||||||||||| ||||||| |||||||||| |||||||    
T  2201140 aaaacagcttatagcttatatgaaaacagtttgactttgttttatct 2201094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 2865718 - 2865760
Alignment:
Q  157 aaacaacttatagcttatacgaaaacaatttgactttgattta 199  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||    
T  2865718 aaacaacttataggttatatgaaaacaatttgactttgtttta 2865760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 32555039 - 32555085
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||||||||||||||||| ||||| |||||||||||  |||||||    
T  32555039 aaaacaacttatagcttataggaaaataatttgactttattttatct 32555085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 51197785 - 51197831
Alignment:
Q  147 acttatattaaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||| ||||||||||||| |||||| |||||||||||| ||||    
T  51197785 acttatatgaaaacaacttataacttatatgaaaacaatttgtcttt 51197831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 19679386 - 19679423
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  19679386 aaaacaacttatagcttataagaaaacagtttgacttt 19679423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 35450602 - 35450565
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  35450602 aaaacaacttatagcttataagaaaacaattttacttt 35450565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 36139889 - 36139844
Alignment:
Q  157 aaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||||||||||||||||||||| || |||||||||  |||||||    
T  36139889 aaacaacttatagcttatacgaaatcagtttgactttattttatct 36139844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 30956684 - 30956752
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttatg 224  Q
    ||||||||||||||| ||||| |||||||||| |||||  ||||||| |||  ||  ||||||||||||    
T  30956684 aaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatg 30956752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 30972496 - 30972564
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttatg 224  Q
    ||||||||||||||| ||||| |||||||||| |||||  ||||||| |||  ||  ||||||||||||    
T  30972496 aaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatg 30972564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 5421978 - 5422067
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttatgataagtatttatatatgataa 245  Q
    |||||||||||||||||||| ||||||||||||||| |  ||||||| ||| |||| ||||||||||| ||||| | |||||| ||||||    
T  5421978 aaaacaacttatagcttataagaaaacaatttgactatattttatcttttgtcatggaaatagcttataataagcacttatatgtgataa 5422067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 7218132 - 7218169
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7218132 aaaacaacttatagcttatatgaaaacaatttgacttt 7218169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 25006092 - 25006129
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||||| |||||||||||||||||    
T  25006092 aaaacaacttatagcttatatgaaaacaatttgacttt 25006129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 187
Target Start/End: Original strand, 11218003 - 11218034
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaattt 187  Q
    ||||||||||||||||||||||||||||||||    
T  11218003 aaaacaacttatagcttatacgaaaacaattt 11218034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 36151563 - 36151630
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttat 223  Q
    ||||||| ||||| ||||||||||||||||||||||||  ||||||| |||  ||  |||||||||||    
T  36151563 aaaacaatttataacttatacgaaaacaatttgactttattttatcttttgttattgaaatagcttat 36151630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 49255146 - 49255213
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttat 223  Q
    |||||| ||||||| | ||||| |||||||||||||||||||||||| |||  || ||||||| ||||    
T  49255146 aaaacatcttatagttaatacgtaaacaatttgactttgatttatcttttgtgatataaataggttat 49255213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 15515553 - 15515471
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttatgataagtatttatat 238  Q
    |||||||||||||||||||||||||||| ||||| |||  | ||||| |    ||| ||||||||||| ||||| ||||||||    
T  15515553 aaaacaacttatagcttatacgaaaacattttgattttattctatctttccttatggaaatagcttataataagcatttatat 15515471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 27738238 - 27738284
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    ||||||| |||||||||||| |||||||||||||||||  |||||||    
T  27738238 aaaacaaattatagcttatatgaaaacaatttgactttattttatct 27738284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 30371160 - 30371114
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||||||||||||||||| ||||||||||||| |||  |||||||    
T  30371160 aaaacaacttatagcttatatgaaaacaatttgagtttattttatct 30371114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 17269262 - 17269225
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  17269262 aaaacaacttattgcttatatgaaaacaatttgacttt 17269225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 37295776 - 37295813
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  37295776 aaaacaacttatagcttaaacgaaaacaatttaacttt 37295813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 25005855 - 25005891
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactt 192  Q
    |||||||||||||||||||| |||||||| |||||||    
T  25005855 aaaacaacttatagcttatatgaaaacaagttgactt 25005891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 415316 - 415269
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatctc 203  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||    
T  415316 aaaacaacttatagcttatacgaaaacaatttaactttgttttatctc 415269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 33828662 - 33828621
Alignment:
Q  152 tattaaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  33828662 tattaaaacaacttataacttatacgaaaacaatttgacttt 33828621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 5550150 - 5550107
Alignment:
Q  150 tatattaaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  5550150 tatatgaaaacagcttatagcttatatgaaaacaatttgacttt 5550107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 9093614 - 9093681
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttat 223  Q
    |||||| ||||||||||||||||||||||||| |||||  ||||||| |||  ||  |||||||||||    
T  9093614 aaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgatatagaaatagcttat 9093681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 20671923 - 20671969
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    ||||||| ||| ||||||||||||||||||||||||||  |||||||    
T  20671923 aaaacaatttaaagcttatacgaaaacaatttgactttattttatct 20671969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 31671132 - 31671178
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||| ||||||||||||| ||||||||||| |||||| |||||||    
T  31671132 aaaacagcttatagcttatatgaaaacaatttaactttgttttatct 31671178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 4006726 - 4006689
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  4006726 aaaacaacttatagcttatataaaaacaatttgacttt 4006689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 6310282 - 6310319
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  6310282 aaaacaacttatagcttatatgaaaacaattagacttt 6310319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 24836262 - 24836303
Alignment:
Q  161 aacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    ||||||||| |||||||||||||||||||||||  |||||||    
T  24836262 aacttatagtttatacgaaaacaatttgactttattttatct 24836303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 10272489 - 10272525
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactt 192  Q
    |||||||||||||||||||||||||||||||||||||    
T  10272489 aaaacaacttatagcttatacgaaaacaatttgactt 10272525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 42181151 - 42181196
Alignment:
Q  157 aaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||||    
T  42181151 aaacaacttatagcttatatgaaaaccatttgactttgttttatct 42181196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 2568670 - 2568619
Alignment:
Q  156 aaaacaacttatagcttatacg-aaaacaatttgactttgatttatctcttg 206  Q
    |||||||||||||||||||||| |||||||||| |||||| ||||| |||||    
T  2568670 aaaacaacttatagcttatacgaaaaacaatttaactttgttttatatcttg 2568619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 186
Target Start/End: Original strand, 6587165 - 6587195
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatt 186  Q
    |||||||||||||||||||||||||||||||    
T  6587165 aaaacaacttatagcttatacgaaaacaatt 6587195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 12425583 - 12425537
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||| ||||||||||||||||||||||||| |||||  |||||||    
T  12425583 aaaacagcttatagcttatacgaaaacaatttaactttattttatct 12425537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 13244540 - 13244578
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttg 194  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  13244540 aaaacaacttatagtttatacgaaaacaagttgactttg 13244578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 3537081 - 3537135
Alignment:
Q  148 cttatattaaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    ||||||| | |||||| |||||||||||||||||||||||||||||  |||||||    
T  3537081 cttatatgataacaacctatagcttatacgaaaacaatttgactttattttatct 3537135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 11000626 - 11000692
Alignment:
Q  163 cttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttatgataag 229  Q
    |||||||||||| ||||||||||||||||||  ||||||| |||  ||| ||||||||||| |||||    
T  11000626 cttatagcttattcgaaaacaatttgactttattttatcttttgttatggaaatagcttataataag 11000692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 24558865 - 24558819
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||||||||||||||||||||||| ||||| |||| | |||||||    
T  24558865 aaaacaacttatagcttatacgaaaataatttaacttcggtttatct 24558819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 34770904 - 34770858
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||||||||||||||| | |||||||||||||||||  |||||||    
T  34770904 aaaacaacttatagcttaaatgaaaacaatttgactttattttatct 34770858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 9834847 - 9834879
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttg 188  Q
    |||||||||||||||||||| ||||||||||||    
T  9834847 aaaacaacttatagcttatatgaaaacaatttg 9834879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 10218947 - 10218915
Alignment:
Q  161 aacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||| ||||||||||||||||    
T  10218947 aacttatagcttatacaaaaacaatttgacttt 10218915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 12361204 - 12361168
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactt 192  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  12361204 aaaacagcttatagcttatatgaaaacaatttgactt 12361168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 11513910 - 11513864
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||    
T  11513910 aaaacaacttatagcttatatgaaaacaatttgactttattttatct 11513864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 35459911 - 35459855
Alignment:
Q  167 tagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttat 223  Q
    |||||||||||||||||||||||||||  ||||||| |||| ||  |||||||||||    
T  35459911 tagcttatacgaaaacaatttgactttattttatcttttggtatacaaatagcttat 35459855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 22681243 - 22681289
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||| ||||||||||||| |||||||||||| ||||| |||||||    
T  22681243 aaaacagcttatagcttatatgaaaacaatttggctttgttttatct 22681289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 25609808 - 25609762
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||||||||||||||||||||||| || ||||||||  |||||||    
T  25609808 aaaacaacttatagcttatacgaaaataaattgactttattttatct 25609762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 1625912 - 1625875
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  1625912 aaaacaacttataacttatacgaaaacaatttaacttt 1625875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 193
Target Start/End: Complemental strand, 1899945 - 1899916
Alignment:
Q  164 ttatagcttatacgaaaacaatttgacttt 193  Q
    ||||||||||||||||||||||||||||||    
T  1899945 ttatagcttatacgaaaacaatttgacttt 1899916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 9750958 - 9750921
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  9750958 aaaacaacttatagcttataagaaaacaatttaacttt 9750921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 33944617 - 33944580
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  33944617 aaaacaatttatagcttatatgaaaacaatttgacttt 33944580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 35755560 - 35755597
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||| | |||||||||||||||||    
T  35755560 aaaacaacttatagcttacatgaaaacaatttgacttt 35755597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 37766810 - 37766773
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  37766810 aaaacaacttatagtttatacgaaaacattttgacttt 37766773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 42907371 - 42907334
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  42907371 aaaacaacttatagcttaaacgaaaacaatttaacttt 42907334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 40158730 - 40158694
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactt 192  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  40158730 aaaacaacttattgcttatacgaaaacagtttgactt 40158694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 43199852 - 43199888
Alignment:
Q  157 aaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||||| |||||||||| |||||    
T  43199852 aaacaacttatagcttatacaaaaacaatttaacttt 43199888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 11814 - 11855
Alignment:
Q  157 aaacaacttatagcttatacgaaaacaatttgactttgattt 198  Q
    ||||||||||||||||||||||||||||||| ||||| ||||    
T  11814 aaacaacttatagcttatacgaaaacaatttaactttaattt 11855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 13949903 - 13949948
Alignment:
Q  157 aaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    ||||||||||||||||||| |||||||||||||||||  |||||||    
T  13949903 aaacaacttatagcttatatgaaaacaatttgactttattttatct 13949948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 47119026 - 47119069
Alignment:
Q  159 acaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||    
T  47119026 acaacttatagcttatatgaaaacaatttaactttgttttatct 47119069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 25885871 - 25885825
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||||    
T  25885871 aaaacaacttatagcttacacgaaaacaatttaactttattttatct 25885825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 47946216 - 47946174
Alignment:
Q  150 tatattaaaacaacttatagcttatacgaaaacaatttgactt 192  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||    
T  47946216 tatatgaaaacaatttatagcttatacgaaaacaatttaactt 47946174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 10192296 - 10192259
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  10192296 aaaacaacttataacttatatgaaaacaatttgacttt 10192259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 27043888 - 27043925
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  27043888 aaaacatcttatagcttatacgaaaacaatttaacttt 27043925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 49219151 - 49219114
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  49219151 aaaacaacttatagcttatatgaaaataatttgacttt 49219114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 4071892 - 4071848
Alignment:
Q  158 aacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||||||||||||||| ||||| |||||||||||  |||||||    
T  4071892 aacaacttatagcttatatgaaaataatttgactttattttatct 4071848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 30581731 - 30581771
Alignment:
Q  152 tattaaaacaacttatagcttatacgaaaacaatttgactt 192  Q
    |||||||||| ||||||||||||||||||| | ||||||||    
T  30581731 tattaaaacagcttatagcttatacgaaaatagtttgactt 30581771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 1417276 - 1417209
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttat 223  Q
    |||||||||||| ||||||| |||||||||||||||||  ||||||| |||  || ||||||| ||||    
T  1417276 aaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttatataaatagtttat 1417209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 45813238 - 45813305
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttat 223  Q
    |||||||||||||| ||||| |||||||| ||||||||  ||||||| |||| ||  |||||||||||    
T  45813238 aaaacaacttatagattatatgaaaacaagttgactttattttatcttttggtatagaaatagcttat 45813305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 946764 - 946718
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    ||||||||||||| || |||||||||||||||||||||  |||||||    
T  946764 aaaacaacttataactaatacgaaaacaatttgactttattttatct 946718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 12110372 - 12110326
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||| |||||||||||||| ||||||||||||||||  |||||||    
T  12110372 aaaacagcttatagcttataccaaaacaatttgactttattttatct 12110326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 30180063 - 30180017
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||| ||||||||||||||||||||||||| |||||  |||||||    
T  30180063 aaaacagcttatagcttatacgaaaacaatttaactttattttatct 30180017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 38010726 - 38010680
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||| ||||||||||||| |||||||||||| ||||| |||||||    
T  38010726 aaaacagcttatagcttatatgaaaacaatttggctttgttttatct 38010680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 24895368 - 24895331
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  24895368 aaaacaacttatagcttatatgaaaataatttgacttt 24895331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 24909676 - 24909639
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  24909676 aaaacaacttatagcttatatgaaaataatttgacttt 24909639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 28613594 - 28613659
Alignment:
Q  158 aacaacttatagcttatacgaaaacaatttgactttgatttatctcttggcatgtaaatagcttat 223  Q
    ||||||||||| ||||||| |||||||||| |||||| ||||||| |||  ||  |||||||||||    
T  28613594 aacaacttataacttatacaaaaacaatttaactttgttttatcttttgttataaaaatagcttat 28613659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 30496716 - 30496679
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  30496716 aaaacaacctataggttatacgaaaacaatttgacttt 30496679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 18516308 - 18516344
Alignment:
Q  157 aaacaacttatagcttatacgaaaacaatttgacttt 193  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  18516308 aaacaacttatagcttatatgaacacaatttgacttt 18516344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 44917595 - 44917639
Alignment:
Q  157 aaacaacttatagcttatacgaaaacaatttgactttgatttatc 201  Q
    ||||||||||||| |||||| |||||| |||||||||| ||||||    
T  44917595 aaacaacttatagattatacaaaaacagtttgactttgctttatc 44917639  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 27588 - 27542
Alignment:
Q  156 aaaacaacttatagcttatacgaaaacaatttgactttgatttatct 202  Q
    |||||||||||||| ||||| |||||||||||||||||  |||||||    
T  27588 aaaacaacttatagtttatatgaaaacaatttgactttattttatct 27542  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 181
Target Start/End: Complemental strand, 3032 - 3003
Alignment:
Q  152 tattaaaacaacttatagcttatacgaaaa 181  Q
    ||||||||||||||||||||||||||||||    
T  3032 tattaaaacaacttatagcttatacgaaaa 3003  T

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