View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0708_high_13 (Length: 258)
Name: NF0708_high_13
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_high_13 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 48074599 - 48074763
Alignment:
| Q |
94 |
tgttaccaaaggatagggaagggagggaactagaagtgtgtttgagacagagagccagagaagaccaaaaccaaggaaagataagacagcaccaatgaaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48074599 |
tgttaccaaaggatagggaagggagggaactagaagtgtgtttgagacagagagccagagaagaccaaaaccaaggaaagataagacagcaccaatgaaa |
48074698 |
T |
|
| Q |
194 |
agcataagccaaggagggaacttgttgcaaacaataccaggaagaagtccaacattttcaccaat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48074699 |
agcataagccaaggagggaacttgttgcaaacaataccaggaagaagtccaacattttcaccaat |
48074763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 48084130 - 48084190
Alignment:
| Q |
198 |
taagccaaggagggaacttgttgcaaacaataccaggaagaagtccaacattttcaccaat |
258 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48084130 |
taagccaacgagggaacttgttgccaacaataccaggaaaaagtccaacattttcaccaat |
48084190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University