View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0708_high_20 (Length: 211)

Name: NF0708_high_20
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0708_high_20
NF0708_high_20
[»] chr3 (1 HSPs)
chr3 (38-175)||(31784850-31784987)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 31784987 - 31784850
Alignment:
38 caatttcaacactctatcatcaagggaatcaaaatcatatggtttaaaaacaactgtttcatcaacctgattattcaaatcttgcaaccaaaggttttgg 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
31784987 caatttcaacactctatcatcaagggaatcaaaatcatatggtttaaaaacaactgtttcatcaacctgattatacaaatcttgcaaccaaaggttttgg 31784888  T
138 ttctcagttgagacatgttcaaagttttcatcatctgt 175  Q
    ||||||||||||||||||||||||||| ||||||||||    
31784887 ttctcagttgagacatgttcaaagtttccatcatctgt 31784850  T

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