View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0708_high_5 (Length: 332)

Name: NF0708_high_5
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0708_high_5
NF0708_high_5
[»] chr4 (3 HSPs)
chr4 (27-220)||(28612094-28612287)
chr4 (27-219)||(28607332-28607524)
chr4 (160-219)||(11104128-11104185)
[»] chr1 (2 HSPs)
chr1 (27-219)||(34906753-34906945)
chr1 (231-309)||(50767465-50767543)
[»] chr2 (1 HSPs)
chr2 (27-220)||(8538831-8539024)
[»] chr6 (1 HSPs)
chr6 (71-219)||(2308757-2308905)
[»] chr8 (4 HSPs)
chr8 (27-154)||(17123887-17124016)
chr8 (88-154)||(17121733-17121801)
chr8 (160-219)||(12930333-12930390)
chr8 (160-219)||(12935079-12935136)
[»] chr3 (1 HSPs)
chr3 (144-219)||(51298523-51298598)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 28612094 - 28612287
Alignment:
Q  27 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28612094 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatg 28612193  T
Q  127 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28612194 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacat 28612287  T

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Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 28607332 - 28607524
Alignment:
Q  27 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28607332 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatg 28607431  T
Q  127 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607432 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 28607524  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 11104185 - 11104128
Alignment:
Q  160 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    ||||| ||||||| ||||||||||||||||  |||  ||||||||||| |||||||||||    
T  11104185 caattgcttgtagcaattgtctttggctgg--acataacccacacgtgatggggccaaca 11104128  T

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Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 34906945 - 34906753
Alignment:
Q  27 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  34906945 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatt 34906846  T
Q  127 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34906845 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 34906753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 50767465 - 50767543
Alignment:
Q  231 gtaacaggaatgagattgaatgaaatgaggtggagtgggagcttacatcattcatgaagtggcctggtgtggatgatga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50767465 gtaacaggaatgagattgaatgaaatgaggtggagtgggagcttacatcattcatgaagtggcctggtgtggataatga 50767543  T

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Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 27 - 220
Target Start/End: Complemental strand, 8539024 - 8538831
Alignment:
Q  27 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  8539024 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccttaagctataccatagctttcctatttgtagaaaaatg 8538925  T
Q  127 catccttgcattaaataggtagaagactatttacaa-ttacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacat 220  Q
    |||| |||||||||||  ||||||||||| ||| || ||| || |||||||||||||||||||| |||| |||||||| ||||||||||||||||    
T  8538924 catcattgcattaaatgagtagaagactagttataatttatttatagtaattgtctttggctgg-aacagtacccacatgtggtggggccaacat 8538831  T

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Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 2308905 - 2308757
Alignment:
Q  71 tagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgt 170  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2308905 tagccatgtctctccaccgtaagctataccatagttttcctatttatagaaaaatacatccttgcattaaataggtagaagactatttacaattacttgt 2308806  T
Q  171 agtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2308805 agtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 2308757  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 17124016 - 17123887
Alignment:
Q  27 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaa--aa 124  Q
    ||||||||||| | |||||||||||||||  |||||| || ||||||||||| ||||||||| |||||||||  |||| |||||||||||||||||  ||    
T  17124016 atgaattgcaaacattcacacttttctgctaagcaagataagcctagccatgcctctccaccttaagctatactatagttttcctatttgtagaaaataa 17123917  T
Q  125 tgcatccttgcattaaataggtagaagact 154  Q
    ||| |||||||||||||||  |||||||||    
T  17123916 tgcttccttgcattaaataaatagaagact 17123887  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 17121801 - 17121733
Alignment:
Q  88 cgtaagctatatcatagctttcctatttgtaga--aaaatgcatccttgcattaaataggtagaagact 154  Q
    ||||||||||  |||| ||||||||||||||||  ||||||| |||||||||||||||  |||||||||    
T  17121801 cgtaagctatgccatatctttcctatttgtagaaaaaaatgcttccttgcattaaatacatagaagact 17121733  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 12930390 - 12930333
Alignment:
Q  160 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    ||||| ||||||| ||||||||||||||||| | ||  ||||||||||||||||||||||    
T  12930390 caattgcttgtagcaattgtctttggctggacataa--cccacacgtggtggggccaaca 12930333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 12935136 - 12935079
Alignment:
Q  160 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    ||||| ||||||| ||||||||||||||||| | ||  ||||||||||||||||||||||    
T  12935136 caattgcttgtagcaattgtctttggctggacataa--cccacacgtggtggggccaaca 12935079  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 51298598 - 51298523
Alignment:
Q  144 ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||  ||||||||| |||||||||||||||||||||    
T  51298598 ggtagaaaactatttgcaattacttgtagtaattgtttttggccagaaacaatagccacacgtggtggggccaaca 51298523  T

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