View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0708_high_7 (Length: 315)
Name: NF0708_high_7
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 10664087 - 10663925
Alignment:
| Q |
41 |
accattaaacggtactaataacatatatatgagaagaataacaatgagaaaggtatcaagccactttaccttacatggtataaagttcgagcagaacctg |
140 |
Q |
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| T |
10664087 |
accattaaacggtactaataacatatatatacgaagaataacaatgagaaaggtatcaagccactttaccttacatggtataaagttcgatca-aacctg |
10663989 |
T |
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| Q |
141 |
tgagaacctaattttnnnnnnngtggacatacacacaagttaaggcatttaggcatgctaatag |
204 |
Q |
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| T |
10663988 |
tgagagcctaattttagaaaaagtggacatacacacaagttaaggcatttaggcatgctaatag |
10663925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 10663757 - 10663716
Alignment:
| Q |
270 |
ccttttggcatatacaagaagatgattagaaagagtggactt |
311 |
Q |
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| T |
10663757 |
ccttttggcatttacaagaagatgattagaaagagtggactt |
10663716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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