View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0708_high_8 (Length: 314)
Name: NF0708_high_8
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 10664087 - 10663925
Alignment:
| Q |
41 |
accattaaacggtactaataacatatatatgagaagaataacaatgagaaaggtatcaagccactttaccttacatggtataaagttcgatcaaacctgt |
140 |
Q |
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| T |
10664087 |
accattaaacggtactaataacatatatatacgaagaataacaatgagaaaggtatcaagccactttaccttacatggtataaagttcgatcaaacctgt |
10663988 |
T |
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| Q |
141 |
gagaacctaattttnnnnnnngtggacatacacacaagttaaggcatttaggcatgctaatag |
203 |
Q |
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| T |
10663987 |
gagagcctaattttagaaaaagtggacatacacacaagttaaggcatttaggcatgctaatag |
10663925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 10663757 - 10663716
Alignment:
| Q |
269 |
ccttttggcatatacaagaagatgattagaaagagtggactt |
310 |
Q |
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| T |
10663757 |
ccttttggcatttacaagaagatgattagaaagagtggactt |
10663716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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