View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0708_low_15 (Length: 320)
Name: NF0708_low_15
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 99 - 319
Target Start/End: Complemental strand, 38209498 - 38209277
Alignment:
| Q |
99 |
atgatcctgtaacaaataaaacaaaattatagatatcaatattaat--gcacaaaaggtgctgataaaatcatatgtataacatataagttaatttagga |
196 |
Q |
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| T |
38209498 |
atgaccctgtgacaaataaaacagaatgatggataccaatatttatatgcacaaagggtgctgataaaatcatttgaatagcatataagttaatttagaa |
38209399 |
T |
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| Q |
197 |
cgacattgaatgtagaaatgtttttatcccttacctttgattagcttgttgaagccttttcattcttcatagtcatatgaatagctttagacttatcctc |
296 |
Q |
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| T |
38209398 |
caacattcaatgtagaaatgttttt-tcccttaccttttattagcttgttgaagccttttcattcttcataatcatatgaatagctttagacttattctc |
38209300 |
T |
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| Q |
297 |
ttcaaccatctccctaagtatat |
319 |
Q |
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||||||||| ||||||||||||| |
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| T |
38209299 |
ttcaaccatatccctaagtatat |
38209277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 32248864 - 32248960
Alignment:
| Q |
223 |
tcccttacctttgattagcttgttgaagccttttcattcttcatagtcatatgaatagctttagacttatcctcttcaaccatctccctaagtatat |
319 |
Q |
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| T |
32248864 |
tcccttacttttgattagattgttgaagccttttcattcttcataatcatgtgaatagctttagacttatcctcttcaaccatctccctaagtatat |
32248960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 32193414 - 32193376
Alignment:
| Q |
281 |
ctttagacttatcctcttcaaccatctccctaagtatat |
319 |
Q |
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| T |
32193414 |
ctttagacttatcctcttcaactatctccctaagtatat |
32193376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 8843432 - 8843498
Alignment:
| Q |
251 |
ccttttcattcttcatagtcatatgaatagctttagacttatcctcttcaaccatctccctaagtat |
317 |
Q |
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| T |
8843432 |
ccttttcattcttcataatcatatgaatagctttagacttatcctcttcaaccatctccctaagtat |
8843498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 36376596 - 36376506
Alignment:
| Q |
227 |
ttacctttgattagcttgttgaagccttttcattcttcatagtcatatgaatagctttagacttatcctcttcaaccatctccctaagtat |
317 |
Q |
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| T |
36376596 |
ttacctttgattagcttgttgaagtcttttcattcttcatgatcatatgaataagtttggacttgtcctcttcaaccatctctctgagtat |
36376506 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 35958381 - 35958450
Alignment:
| Q |
242 |
ttgttgaagccttttcattcttcatagtcatatgaatagctttagacttatcctcttcaaccatctccct |
311 |
Q |
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||||||||||||||||||||||||| ||||||| | | ||||||||||||||| || ||||| ||||| |
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| T |
35958381 |
ttgttgaagccttttcattcttcatgatcatatggaatgatttagacttatcctcctcgaccatttccct |
35958450 |
T |
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