View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0708_low_19 (Length: 310)

Name: NF0708_low_19
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0708_low_19
NF0708_low_19
[»] chr6 (9 HSPs)
chr6 (58-310)||(4365661-4365913)
chr6 (63-306)||(4360270-4360513)
chr6 (62-310)||(4370065-4370313)
chr6 (72-274)||(4414439-4414640)
chr6 (166-272)||(4377325-4377431)
chr6 (77-269)||(4389919-4390111)
chr6 (166-269)||(4384898-4385001)
chr6 (151-306)||(5725395-5725547)
chr6 (72-120)||(5725578-5725626)
[»] chr8 (1 HSPs)
chr8 (163-284)||(15658632-15658753)
[»] scaffold0003 (2 HSPs)
scaffold0003 (165-215)||(245811-245861)
scaffold0003 (167-215)||(244638-244686)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 58 - 310
Target Start/End: Original strand, 4365661 - 4365913
Alignment:
Q  58 gtcagaatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtca 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4365661 gtcagaatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtca 4365760  T
Q  158 caatgtggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaataga 257  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4365761 caatgtggacagcattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttctcaggcgattccaacatatcagacgcatcaataga 4365860  T
Q  258 cttcaaaaagaatgttccctttggactgttcactaaccagtttagtatggtcc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4365861 cttcaaaaagaatgttccctttggactgttcactaaccagtttagtatggtcc 4365913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 63 - 306
Target Start/End: Original strand, 4360270 - 4360513
Alignment:
Q  63 aatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatg 162  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||  |||||| ||| | ||||||  |||||||||||| |||| |    
T  4360270 aatgcaatgtgttgcgcaaggtgtccaatacagcctagtccttttcgccatcaacatcccagcggcagctacatagtatggtgtatattccgttacaacg 4360369  T
Q  163 tggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttca 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  4360370 tggacaacattttcttccccaacctcttcaacaacgtcatccatcattttaaagagtttctcagacgattccaacatatcagacgcatcaatagtcttca 4360469  T
Q  263 aaaagaatgttccctttggactgttcactaaccagtttagtatg 306  Q
    ||||||||||||||||||||||||||| |||| |||||||||||    
T  4360470 aaaagaatgttccctttggactgttcagtaacaagtttagtatg 4360513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 62 - 310
Target Start/End: Original strand, 4370065 - 4370313
Alignment:
Q  62 gaatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaat 161  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||  | |  | |||  | || ||  |||||  |||||||||||    
T  4370065 gaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaat 4370164  T
Q  162 gtggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttc 261  Q
     ||||||||||||||||| |||||||||||||||| ||  ||||  |||  ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  4370165 ttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttc 4370264  T
Q  262 aaaaagaatgttccctttggactgttcactaaccagtttagtatggtcc 310  Q
    |||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  4370265 aaaaagaatgttccgtttggactgttcactaacaagtttattatggtcc 4370313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 274
Target Start/End: Complemental strand, 4414640 - 4414439
Alignment:
Q  72 tgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggacaaca 171  Q
    |||||||||||| |||||||||| ||||||||||||| |||||  ||||  | | ||  ||  ||||||   |||||  || |||||||| |||||||||    
T  4414640 tgttgcacaaggtgtccaatacaacctagtccttttcaccatctacatctcaccagcaactttgtagtaggttgtattgtctgtcacaatttggacaaca 4414541  T
Q  172 ttttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaaagaatg 271  Q
    |||||||||| ||||||||| ||||  ||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||  ||||||||||||||||    
T  4414540 ttttcttccc-aacctcttctacaatttcatccatcatcttaaagagtttgttaggtgattccaacatattcgacgcatcaacggacttcaaaaagaatg 4414442  T
Q  272 ttc 274  Q
    |||    
T  4414441 ttc 4414439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 4377325 - 4377431
Alignment:
Q  166 acaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaa 265  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||| |||||| ||||||||||  ||||||||||    
T  4377325 acaacattttcttccccaacctcttcaacaacatcatccatcatcttaaacaatttctcaggcgattccatcatatctgacgcatcaaccgacttcaaaa 4377424  T
Q  266 agaatgt 272  Q
    |||||||    
T  4377425 agaatgt 4377431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 269
Target Start/End: Original strand, 4389919 - 4390111
Alignment:
Q  77 cacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggacaacattttc 176  Q
    ||||||| |||||||||| ||||||||| ||| |||||| ||||  | | || |||  | | ||| | ||||  ||||||||||  || |||||||||||    
T  4389919 cacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaatatgccgtattatccgtcacaacttgaacaacattttc 4390018  T
Q  177 ttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaaagaa 269  Q
    ||| ||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||||||||||| ||||||||||  ||||||||||||||    
T  4390019 ttcaccaacctcttcaacaacatcatccatcatcttaaacaatttctcagacgattccaacatatcggacgcatcaaccgacttcaaaaagaa 4390111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 4384898 - 4385001
Alignment:
Q  166 acaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaa 265  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||||||||||| ||||||||||  ||||| ||||    
T  4384898 acaacattttcttccccaacctcttcaacaacatcatccatcatcttaaacaatttctcagacgattccaacatatctgacgcatcaaccgactttaaaa 4384997  T
Q  266 agaa 269  Q
    ||||    
T  4384998 agaa 4385001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 306
Target Start/End: Complemental strand, 5725547 - 5725395
Alignment:
Q  151 tccgtcacaatgtggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcga--ttccaacatatcagacgc 248  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||  ||||| ||  ||     |||||||  |     
T  5725547 tccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtgaactt-----atatcagctga 5725453  T
Q  249 atcaatagacttcaaaaagaatgttccctttggactgttcactaaccagtttagtatg 306  Q
     |||| ||||||||||||||||||||||||||||||||| || ||  |||||||||||    
T  5725452 ttcaacagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatg 5725395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 5725626 - 5725578
Alignment:
Q  72 tgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatc 120  Q
    |||||||||||| |||||||||| |||||||||||||  ||||| ||||    
T  5725626 tgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatc 5725578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 284
Target Start/End: Complemental strand, 15658753 - 15658632
Alignment:
Q  163 tggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttca 262  Q
    ||||||||||||||||| |||| |||||||||||| ||||| ||||||||||| | ||| ||||  | ||     || ||||| | |||||||||||| |    
T  15658753 tggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaaaattttatcagcagttttggtaatgtcagatggatcaatagacttta 15658654  T
Q  263 aaaagaatgttccctttggact 284  Q
    |||| || ||||||||||||||    
T  15658653 aaaaaaaagttccctttggact 15658632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 245811 - 245861
Alignment:
Q  165 gacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaa 215  Q
    ||||||||||||||| |||| |||||||||||| ||||| |||||||||||    
T  245811 gacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa 245861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 244686 - 244638
Alignment:
Q  167 caacattttcttccccaacctcttcaacaacgtcatccatcatcttaaa 215  Q
    ||||||||||||| |||| || ||||||||| ||||| |||||||||||    
T  244686 caacattttcttctccaatcttttcaacaacatcatcaatcatcttaaa 244638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University