View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0708_low_2 (Length: 467)
Name: NF0708_low_2
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 103 - 452
Target Start/End: Complemental strand, 19755701 - 19755352
Alignment:
| Q |
103 |
ctttgtacattttttaatgcttggcttttgtctactccagattgttttcttggaattgtgctcagatcgtcaggaagtgcttttgcatgacaacatggag |
202 |
Q |
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| T |
19755701 |
ctttgaacattttttaatgcttggcttttgtctactccagattgttttcttggaattgtgctcagatcgtcaggaagtgcttttgcatgacaacatggag |
19755602 |
T |
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| Q |
203 |
gtttccactcttttagttcatattttagataatgcaatcatgacaattaggggtagcttttcatgtattgataatcaacattatcatagtataattaatt |
302 |
Q |
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| T |
19755601 |
gtttccactattttagttcatatttcagataatgcaatcatgacaattaggtgtagcttttcttgtattgataatcaacattatcatagtataattaatt |
19755502 |
T |
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| Q |
303 |
tctttaatttctcacaggcacttaccatgggagaaatgaatgatgcaatgaggaaggaaaaatatagcatctctcgaatggttactagctggttcgatgc |
402 |
Q |
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| T |
19755501 |
tctttaatttctcacaggcacttaccatgggagaaatgaatgatgcaatgaggaaggaaaaatatagcatctttcgaatggttactagctggttggatgc |
19755402 |
T |
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| Q |
403 |
cgaggcatgtttcgatgtttgacaattatatttatcatcctattacattt |
452 |
Q |
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| T |
19755401 |
cgaggcatgtttcaatgtttgacaattatatttatcatcctattacattt |
19755352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 346 - 452
Target Start/End: Original strand, 33377170 - 33377276
Alignment:
| Q |
346 |
tgcaatgaggaaggaaaaatatagcatctctcgaatggttactagctggttcgatgccgaggcatgtttcgatgtttgacaattatatttatcatcctat |
445 |
Q |
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| T |
33377170 |
tgcaatgaggaagaaaaaatatagcatcttttgaatacttattagttggttggatgccaaggcatttttcaatatttgacaattatatttatcatcctat |
33377269 |
T |
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| Q |
446 |
tacattt |
452 |
Q |
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| T |
33377270 |
tacattt |
33377276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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