View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0708_low_21 (Length: 300)
Name: NF0708_low_21
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_low_21 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0583 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 69 - 300
Target Start/End: Original strand, 13090166 - 13090397
Alignment:
| Q |
69 |
atcttcatggtggaaatggtggtggtgcttctcctcagccatgatggattgaattagggaaaaaatgagtaattaataagagatgaatcaaagtaatggg |
168 |
Q |
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| T |
13090166 |
atcttcatggtggaaatggtggtggtgcttctcctcagccatgatggattgaattagggaaaaaatgagtaattaataagagatgaatcagagtaatggg |
13090265 |
T |
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| Q |
169 |
tttatggtagaatgagaaagttagaaaggacatgtgacctatttataagttgtaattaaatgattaagttaactttgagttattggttggttaatgtgta |
268 |
Q |
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| T |
13090266 |
tttattgtagaatgagaaagttagaaaggacatgtgacctatttataagttgtaattggatgattaagttaactttgagttattggttggttaatgtgta |
13090365 |
T |
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| Q |
269 |
gctttcttggtaggccatacattattttcttt |
300 |
Q |
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| T |
13090366 |
gctttcttggtaggccatacattattttcttt |
13090397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0583 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0583
Description:
Target: scaffold0583; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 69 - 300
Target Start/End: Original strand, 4539 - 4771
Alignment:
| Q |
69 |
atcttcatggtggaaatggtggtggtgcttctcctcagccatgatggattgaattagggaaaaaatgagtaattaataagagatgaatcaaagtaatggg |
168 |
Q |
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| T |
4539 |
atcttcatggtggaaatggtggtggtgcttctcctcagccatgatggattgaattagggaaaaaatgagtaattaataagagatgaatcaaagtaatggg |
4638 |
T |
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| Q |
169 |
tttatggtagaatgagaaagttagaaaggacatgtgacctatttataagttgtaattaaatgattaagttaactttgagttattgg-ttggttaatgtgt |
267 |
Q |
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| T |
4639 |
tttatggtagaatgagaaagttagaaaggacatgtgacctatttataagttgtaattggatgattaagttaactttgagttattggtttggttaatgtgt |
4738 |
T |
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| Q |
268 |
agctttcttggtaggccatacattattttcttt |
300 |
Q |
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| T |
4739 |
agatttcttggtaggccatacattattttcttt |
4771 |
T |
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