View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0708_low_23 (Length: 276)
Name: NF0708_low_23
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_low_23 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 22054500 - 22054764
Alignment:
| Q |
7 |
aatatcatcatcttctccattctctctttactcacaaccaaagaggcatttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttc |
106 |
Q |
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||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22054500 |
aatatcatcgtcttctgcattctctctttacttacaaccaaagaggcatttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttc |
22054599 |
T |
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| Q |
107 |
ctaagatcgacttcaccaacatcatattgaatagcgacgaatcttattcccgttttcttcaatttgtggactccgttttggcctctcgagacgctgtttt |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22054600 |
ctaagatcgacttcaccaacatcatagtgaatagcgacgaatctaattcccgttttattcaatttgtgaactccgttttggcctctcgagacgctgtttt |
22054699 |
T |
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| Q |
207 |
ttctcatttcatcaatagtttctgcctagaaattttttacggtaaccctaatcttgttcttctca |
271 |
Q |
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||||||||||||||||||||||||||| |||||| || |||||||||||||||| || ||||| |
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| T |
22054700 |
ttctcatttcatcaatagtttctgccttgaaattcaatatggtaaccctaatcttgctcatctca |
22054764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 22064281 - 22064393
Alignment:
| Q |
7 |
aatatcatcatcttctccattctctctttactcacaaccaaagaggcatttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttc |
106 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
22064281 |
aatatcatcatcttctgcattctctctttactcacaaccaaagaggcagtttccacaagcattttgtccaaaagatggactcatctatgtcactttgtcc |
22064380 |
T |
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| Q |
107 |
ctaagatcgactt |
119 |
Q |
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|| ||||| |||| |
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| T |
22064381 |
ctgagatcaactt |
22064393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 7253 - 6999
Alignment:
| Q |
8 |
atatcatcatcttctccattctctctttactcacaaccaaagaggcatttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttcc |
107 |
Q |
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||||||||||||||| ||||||| | ||| |||| ||||||||||| | |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
7253 |
atatcatcatcttctgcattctcccattagtcaccaccaaagaggcggtagccacaagcattttgtccaagagatggactaatctatgtcactttgttcc |
7154 |
T |
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| Q |
108 |
taagatcgacttcaccaacatcatattgaatagcgacgaatcttattcccgttttcttcaatttgtggactccgttttggcctctcgagacgctgttttt |
207 |
Q |
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|| ||||||||||| |||||| | |||||||| |||||||| ||||| ||||| ||||||| ||||||||||| ||||| |||| || |||||| |
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| T |
7153 |
gaaaatcgacttcactaacatctcagtgaatagctacgaatctaattccagttttaacaaatttgtttactccgttttgtcctctggagatgccgttttt |
7054 |
T |
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| Q |
208 |
tctcatttcatcaatagtttctgcctagaaattttttacggtaaccctaatcttg |
262 |
Q |
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||||||||||| |||||||| |||| || ||| || |||||||||||||||| |
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| T |
7053 |
cctcatttcatcgatagtttcagcctcgacattaaatatggtaaccctaatcttg |
6999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 824330 - 824381
Alignment:
| Q |
56 |
ttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttcc |
107 |
Q |
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|||| |||||| |||||||||| ||||||||||||||||| |||| |||||| |
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| T |
824330 |
ttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcc |
824381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 35766326 - 35766394
Alignment:
| Q |
24 |
cattctctctttactcacaaccaaagaggcatttgccacaagtattttgtccaaaagatggactcatct |
92 |
Q |
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|||||||||||| || | ||| ||||||| |||||||||| |||||||||| |||||||||||||| |
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| T |
35766326 |
cattctctcttttgtctccacccaagaggccgttgccacaagcgttttgtccaagagatggactcatct |
35766394 |
T |
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