View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0708_low_24 (Length: 268)
Name: NF0708_low_24
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_low_24 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16101539 - 16101775
Alignment:
| Q |
1 |
tactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattatatttgttggtctttgatttgtctcactttgtttgatgtctc |
100 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||| | | ||||||||||||| |||| |||||||||| ||||| |
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| T |
16101539 |
tacttgcaaaaatctatttgcatcctatggtagtgtcatttgttgtccaatcttgttatttcttttggtctttgattggtcttactttgtttgttgtctt |
16101638 |
T |
|
| Q |
101 |
gtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccactagaagtgaagataattccttatgggtttactg-ccc |
199 |
Q |
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|||||| |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| || |
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| T |
16101639 |
gtcctaattttggtcaattttctttcattcggtgaggatgtcacccaattttatgatcaccactag-ggggaagataattccttatgggtttactgtcca |
16101737 |
T |
|
| Q |
200 |
aaccttaagaccctagtcaaagaggtcgtggtttggtc |
237 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||| |
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| T |
16101738 |
aaccttaaggccctagtcaaagaggttgtggtttggtc |
16101775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 14655064 - 14655292
Alignment:
| Q |
1 |
tactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattatatttgttggtctttgatttgtctcactttgtttgatgtctc |
100 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| | | ||||||||||| |||| | | |||||||| |||||| |
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| T |
14655064 |
tacttgcaaaaatctatttggattctatggtagtgtcatttgttgtccaatcttattatctcttttggtctttgaattgttttattttgtttgttgtctc |
14655163 |
T |
|
| Q |
101 |
gtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccactagaagtgaagataattccttatgggtttactgccca |
200 |
Q |
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| T |
14655164 |
gtcctatttttggtcaattttctttcattcgatgagggtgtcacccaattctattatcaccactagaagggaaattagtttcttatgggtttactgccca |
14655263 |
T |
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| Q |
201 |
accttaagaccctagtcaaagaggtcgtg |
229 |
Q |
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||||||||||| ||||||||||| ||||| |
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| T |
14655264 |
accttaagaccttagtcaaagagttcgtg |
14655292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 38979104 - 38979272
Alignment:
| Q |
67 |
ggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccactag |
166 |
Q |
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||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| | |||||||||||||| || ||||||||||| |
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| T |
38979104 |
ggtctttgaattgtctcactttgtt----gtctcgttctatttttggtcaattttctttcattcggtgagtatgtcacccaattcaattatcaccactag |
38979199 |
T |
|
| Q |
167 |
aagtgaagataattccttatgggtttactgcccaaccttaagaccctagtcaaagaggtcgtggtttggtctg |
239 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38979200 |
aagggaagataattcctaatgggtttactgcccaaccttaagaccctagtcaaagaggtcgtggtttggtctg |
38979272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5518880 - 5518656
Alignment:
| Q |
1 |
tactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattatatttgttggtctttgatttgtctcactttgtttgatgtctc |
100 |
Q |
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||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||| | | ||||||||||| ||||||||||||||||| ||||| |
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| T |
5518880 |
tacttgcaagaatctatttgcattctatggtagtgttatttgttgtccaatcttattatttcttttggtctttgaattgtctcactttgtttgtcgtctc |
5518781 |
T |
|
| Q |
101 |
gtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccactagaagtgaagataattccttatgggtttactgccca |
200 |
Q |
| |
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||| ||| ||| ||| ||||||||||||| || ||||| ||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
5518780 |
gtcttatatttggtcagttttctttcattcagtaatgatgttctccaattctatgatcaccactagaagggaaattaattccttatgggt----cgccca |
5518685 |
T |
|
| Q |
201 |
accttaagaccctagtcaaagaggtcgtg |
229 |
Q |
| |
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||| ||| ||| |||| |||||||||||| |
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| T |
5518684 |
accgtaaaaccttagttaaagaggtcgtg |
5518656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 38978599 - 38978649
Alignment:
| Q |
8 |
aaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttatta |
58 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| | ||||||||| |
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| T |
38978599 |
aaaaatctacttgcattctatggtagtgtcatttgttgttcaatcttatta |
38978649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 9306104 - 9305879
Alignment:
| Q |
1 |
tactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattatatttgttggtctttgatttgtctcactttgtttgatgtctc |
100 |
Q |
| |
|
||||| |||||||||||| |||||||| ||| |||||| ||||||||| ||||| | || || ||||| ||||||| |||||||| | |||| |||| |
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| T |
9306104 |
tacttgcaaaaatctattagcattctacggttgtgtcacttgttgtccaatcttgtgattttatttggtttttgattggtctcactct-tttgtcgtctt |
9306006 |
T |
|
| Q |
101 |
gtcctattttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccactagaagtgaagataattccttatgggtttactgccca |
200 |
Q |
| |
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||||||| || ||||||||| | |||| ||| | ||||||||| | | | |||| |||||||||| ||| |||||||||||| ||||| || ||| |
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| T |
9306005 |
gtcctatattcggtcaattttcctgcattttgtgaaggtgtcacccattaccaagatctccactagaagggaaattaattccttatgagtttattggcca |
9305906 |
T |
|
| Q |
201 |
accttaagaccctagtcaaagaggtcgt |
228 |
Q |
| |
|
||||||| ||| |||| ||||||||||| |
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| T |
9305905 |
accttaa-accttagttaaagaggtcgt |
9305879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 76780 - 76992
Alignment:
| Q |
9 |
aaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattatatttgttggtctttgatttgtctcactttgtttgatgtctcgtcctatt |
108 |
Q |
| |
|
|||||||||| ||||| | ||||||||| | || |||| | ||||| | || | | |||||||||||||||||||||| | |||| |||| ||||| | |
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| T |
76780 |
aaaatctattagcattatgtggtagtgttacttattgttcaatcttgtgatttcttttggtctttgatttgtctcactat-tttgtcgtcttgtccttta |
76878 |
T |
|
| Q |
109 |
ttttatcaattttctttcattcggtgtggatgtcacccaattctatgatcaccactagaagtgaagataattccttatgggtttactgcccaaccttaag |
208 |
Q |
| |
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|| ||||||||| |||||| ||| || ||||||||| | | | |||| |||||||||| ||| ||||| ||||||| |||| ||||||||||||| |
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| T |
76879 |
ttcagtcaattttccttcatttagtgagggtgtcacccattaccaagatctccactagaagggaaattaatttcttatggatttattgcccaaccttaaa |
76978 |
T |
|
| Q |
209 |
accctagtcaaaga |
222 |
Q |
| |
|
||| |||| ||||| |
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|
| T |
76979 |
accttagttaaaga |
76992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 7685246 - 7685276
Alignment:
| Q |
207 |
agaccctagtcaaagaggtcgtggtttggtc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
7685246 |
agaccctagtcaaagaggtcgtggtttggtc |
7685276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 31394015 - 31394047
Alignment:
| Q |
191 |
ttactgcccaaccttaagaccctagtcaaagag |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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|
| T |
31394015 |
ttacttcccaaccttaagaccctagtcaaagag |
31394047 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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