View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0708_low_27 (Length: 260)

Name: NF0708_low_27
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0708_low_27
NF0708_low_27
[»] chr7 (3 HSPs)
chr7 (29-232)||(15128927-15129128)
chr7 (56-137)||(15107469-15107551)
chr7 (1-34)||(26577254-26577287)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 15129128 - 15128927
Alignment:
Q  29 ttatatcatgaatctacatgatactagctacttttaataaacaatcgctgtttccaacttatcagttggtgttgttagatatccatttgaatttcaataa 128  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15129128 ttatatcatgaatctacatgatcctagctacttttaataaacaatgtctgtttccaacttgtcagttggtgttgttagatatccatttgaatttcaataa 15129029  T
Q  129 atgtagcatatgcattggtgtgtcattgtaatataatgtaatgttatgattttcatttctctttcgataattcttcctatatatttttacttgctttaat 228  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||    
T  15129028 atgtagcatatgcattggtgtgtctttgtaatataatgtaatgttatgattttcatttctctttctataattcttcctatata--tttacttgctttaat 15128931  T
Q  229 tatt 232  Q
    ||||    
T  15128930 tatt 15128927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 15107551 - 15107469
Alignment:
Q  56 ctacttttaataaac-aatcgctgtttccaacttatcagttggtgttgttagatatccatttgaatttcaataaatgtagcat 137  Q
    ||||||||||||||  ||||  ||||||||||| |||||||||| || |||||||||||| ||||||| ||||| ||||||||    
T  15107551 ctacttttaataaaggaatctttgtttccaactaatcagttggttttcttagatatccatctgaatttaaataagtgtagcat 15107469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 26577287 - 26577254
Alignment:
Q  1 cctcactaatttttgctttttagtagtgttatat 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  26577287 cctcactaatttttgttttttagtagtgttatat 26577254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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