View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0708_low_4 (Length: 394)
Name: NF0708_low_4
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 44349758 - 44349414
Alignment:
| Q |
9 |
gattatactacagaatgtggagtgcggctagcatgtgccaaatatgctgtgtatggtgtagattatgaaggacatggacaatctgaaggtgttcgttgtt |
108 |
Q |
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| T |
44349758 |
gattgtactacagaatgtggagtacggctagcatgtgccaaatatgctgtgtatggtgtagattatgaaggacatggacaatctgaaggtgttcgttgtt |
44349659 |
T |
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| Q |
109 |
acattaagaagttcaataacattgttaatgactgttatgactttttcaagtcagttagtggtatggattcaaagcctttgtctaatcctttgagtgtata |
208 |
Q |
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| T |
44349658 |
acattaagaagttcaataacattgttaatgactgttatgactttttcaagtcagttagtggtatggattcaaagcctttgtctaatcttttgagtgtata |
44349559 |
T |
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| Q |
209 |
catttttaatcaattctattattttcatcattcattttcatgttaattaattccagtgcttcaagagtacaagggaaaagctaggttcttgtatggagag |
308 |
Q |
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| T |
44349558 |
ca-ttttaatcaattc---tattttcatcattcattttcatg----ttaattccagtgcttcaagagtacatgggaaaagctaggttcttgtatggagag |
44349467 |
T |
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| Q |
309 |
tccatgggtggagcagttagtctacttttgcatcaaaaggacccttctttttg |
361 |
Q |
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| T |
44349466 |
tccatgggtggagcagttagtctacttttgcatcaaaaggatccttctttttg |
44349414 |
T |
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