View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0708_low_40 (Length: 203)
Name: NF0708_low_40
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 20123404 - 20123306
Alignment:
| Q |
1 |
ataaagactgaaagaggtgatactcctcttcaccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20123404 |
ataaagactgaaagaggtgatactcctcttcaccttgcagcatatagaggattcaaaagtatgtgtcaatgtatcattggaaaatatggtgaaaggaag |
20123306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 19896414 - 19896512
Alignment:
| Q |
1 |
ataaagactgaaagaggtgatactcctcttcaccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaag |
99 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
19896414 |
ataaagactgaaaaaggtgatactcctcttcaccttgcagcatatagaggattcacaagtatgtgtgaatgtatcattggaaaaaatggtgaaaggaag |
19896512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 20089548 - 20089450
Alignment:
| Q |
1 |
ataaagactgaaagaggtgatactcctcttcaccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaag |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
20089548 |
ataaagactgaaagaggtgatactcctcttcatcttgcagcatatagaggattcaaaagtatgtgtgaatgtatcattggaaaaaatggtgaaaggaag |
20089450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 20143548 - 20143449
Alignment:
| Q |
4 |
aagactgaaagaggtgatactcctcttcaccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaaggatt |
103 |
Q |
| |
|
|||| ||||| |||||| |||||| | ||||||||||||| |||||||||| | || ||| |||||||||| ||| ||| ||||||||| ||||||| |
|
|
| T |
20143548 |
aagaatgaaaaaggtgacactcctttgcaccttgcagcatcaagaggattcaaagatatatgtgaatgtatcataggagaatgtggtgaaagaaaggatt |
20143449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University