View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0708_low_5 (Length: 394)
Name: NF0708_low_5
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_low_5 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 36 - 380
Target Start/End: Original strand, 4365158 - 4365502
Alignment:
| Q |
36 |
tgacacttgatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccattgcctcata |
135 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4365158 |
tgacacttgatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccattgcctcata |
4365257 |
T |
|
| Q |
136 |
aatgaagcccatgatcgggaccatggttgaatcgaccataagaagcaaattcagcagaggttttacacctttctaacaaatcataacatatttccaaaac |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4365258 |
aatgaagcccatgatcgggaccatggttgaatcgaccataagaagcaaattcagcagaggttttacacctttataacaaatcataacatatttccaaaac |
4365357 |
T |
|
| Q |
236 |
tccttgtccaaaatcatatcctctgcccatttcctagacattggctctgcaaactcgctggacttccattcctcggatgtgaacattcttaccaaagctc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4365358 |
tccttgtccaaaatcatatcctctgcccatttcctagaccttggctctgcaaactcgctggacttccattcctcggatgtgaacattcttaccaaagctc |
4365457 |
T |
|
| Q |
336 |
ctttgttctcgtgaatacaacataaagtatagtatgatgtttgcc |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4365458 |
ctttgttctcgtgaatacaacataaagtatagtatgatgtttgcc |
4365502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 40 - 377
Target Start/End: Original strand, 4369556 - 4369899
Alignment:
| Q |
40 |
acttgatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccattgcctcataaatg |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
4369556 |
acttgatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccatatcctcataaatg |
4369655 |
T |
|
| Q |
140 |
aagcccatgatcgggaccatggttgaatcgaccataagaagcaaattcagcagaggttttacacctttctaacaaatcataacatatttccaaaactcct |
239 |
Q |
| |
|
|| ||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
4369656 |
aaacccatcatcgggaccacggttgagttgaccataagaagcaaattcagcagaggttttacacctttataacaaatcataacatatttccaaaactcct |
4369755 |
T |
|
| Q |
240 |
tgtccaaaatcatatcctctgcccatttcctagacattggctctgcaaactcg------ctggacttccattcctcggatgtgaacattcttaccaaagc |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
4369756 |
tgtccaaaatcatatcctctgcccatttcctagacttcggctctgcaaactcgttggatgtggacttccattcctcggaagtgaacattcttaccaaagc |
4369855 |
T |
|
| Q |
334 |
tcctttgttctcgtgaatacaacataaagtatagtatgatgttt |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
4369856 |
tcctttgttctcgtgaatacaacataaagtaaagtatgatgttt |
4369899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 363
Target Start/End: Original strand, 4359773 - 4360092
Alignment:
| Q |
44 |
gatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccattgcctcataaatgaagc |
143 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || || || |||||||||| || |||||| ||| ||||| || ||||||||||||||||||| | |
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|
| T |
4359773 |
gatcctgccgaacatatttacctttccctttctttgtcatcttcggaaagactcttctgtatctcctctatagctttcaccattgcctcataaatgaaac |
4359872 |
T |
|
| Q |
144 |
ccatgatcgggaccatggttgaatcgaccataagaagcaaattcagcagaggttttacacctttctaacaaatcataacatatttccaaaactccttgtc |
243 |
Q |
| |
|
|||| | || | | |||||| | ||| | ||| || | || | ||| | || |||||| |||||||||||||||| |||||||||| | |||| |
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|
| T |
4359873 |
ccatagttggtttctcgattgaattggccaaacgaaacacttcaagtataggatatatacctttataacaaatcataacatttttccaaaaccctttgtt |
4359972 |
T |
|
| Q |
244 |
caaaatcatatcctctgcccatttcctagacattggctctgcaaactcgctggacttccattcctcggatgtgaacattcttaccaaagctcctttgttc |
343 |
Q |
| |
|
||||| | |||||| |||||| | ||| | || ||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||||||| |
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|
| T |
4359973 |
caaaaccgcatcctcaatgtatttcccattcatcgtctttgcaaactcgctggacttccactccttggatttgaacattcttctcaaagctcctttgttc |
4360072 |
T |
|
| Q |
344 |
tcgtgaatacaacataaagt |
363 |
Q |
| |
|
|| |||| |||||||||||| |
|
|
| T |
4360073 |
tcatgaagacaacataaagt |
4360092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 362
Target Start/End: Complemental strand, 5725986 - 5725814
Alignment:
| Q |
190 |
cagaggttttacacctttctaacaaatcataacatatttccaaaactccttgtccaaaatcatatcctctgcccatttcctagacattggctctgcaaac |
289 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||||| ||||||||||||||||||||||| || |||||| | |||| | | ||| |||||||||| |
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|
| T |
5725986 |
cagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacgaattttccattttttgtctctgcaaac |
5725887 |
T |
|
| Q |
290 |
tcgctggacttccattcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaag |
362 |
Q |
| |
|
||| |||||||||| || ||||||||||||||||| ||| ||| || ||||||| |||| ||| ||||||| |
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|
| T |
5725886 |
tcgttggacttccacctcttggatgtgaacattcttatcaacgcttctctgttctcatgaagacagcataaag |
5725814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 4389553 - 4389621
Alignment:
| Q |
190 |
cagaggttttacacctttctaacaaatcataacatatttccaaaactccttgtccaaaatcatatcctc |
258 |
Q |
| |
|
|||||| ||| |||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||| |
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|
| T |
4389553 |
cagaggatttgcacctttcaaacaaatcataacatttttccaaaactccttgtccaaaaccacatcctc |
4389621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 4414904 - 4414828
Alignment:
| Q |
287 |
aactcgctggacttccattcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaagt |
363 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||||||||| ||||||||||| |||||| |||||||||| |||||| |
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|
| T |
4414904 |
aactggctggacttccactccttggatgtgaacattcttctcaaagctccttcgttctcatgaatacaacctaaagt |
4414828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 258
Target Start/End: Original strand, 4376766 - 4376936
Alignment:
| Q |
88 |
ggaaagactcctccgtatcttatctttagctctctccattgcctcataaatgaagcccatgatcgggaccatgg-ttgaatcgaccataagaagcaaatt |
186 |
Q |
| |
|
|||||||| ||| ||||| | |||||||||| |||||||||| ||||||||||| || || | || ||| | ||| || ||||| | |||||| || |
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|
| T |
4376766 |
ggaaagaccccttcgtatttcatctttagctttctccattgcttcataaatgaaaccagtgg-ctggttcatcgattgtattgaccaaacgaagcacatc |
4376864 |
T |
|
| Q |
187 |
cagcagaggttttacacctttctaacaaatcataacatatttccaaaactccttgtccaaaatcatatcctc |
258 |
Q |
| |
|
|||||||| ||| | || ||| ||||||||||||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
4376865 |
aagcagaggatttgcgccgttcaaacaaatcataacatttttccaaaactccttgtccaaaaccacatcctc |
4376936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 4415120 - 4415052
Alignment:
| Q |
71 |
ctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccattgcctcataaatg |
139 |
Q |
| |
|
||||||||| ||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
4415120 |
ctttctatgacacctttggaaagactccttcgtatctcctctttagcttgctccaatgcctcataaatg |
4415052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 4389434 - 4389504
Alignment:
| Q |
71 |
ctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccattgcctcataaatgaa |
141 |
Q |
| |
|
||||||||| | | ||| ||||||| ||| ||||| | |||||||||| |||||||||| ||||||||||| |
|
|
| T |
4389434 |
ctttctatgccccctttagaaagaccccttcgtatttcatctttagctttctccattgcttcataaatgaa |
4389504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 363
Target Start/End: Original strand, 4384413 - 4384614
Alignment:
| Q |
162 |
ttgaatcgaccataagaagcaaattcagcagaggttttacacctttctaacaaatcataacatatttccaaaactccttgtccaaaatcatatcctctgc |
261 |
Q |
| |
|
|||||| ||||| | |||||| || |||||||| ||| | || ||| ||||| || |||||| |||||| |||||||||||||||| || |||||| || |
|
|
| T |
4384413 |
ttgaattgaccaaacgaagcacatcaagcagaggatttgcgccgttcaaacaattcgtaacatttttccagaactccttgtccaaaaccacatcctcagc |
4384512 |
T |
|
| Q |
262 |
ccatttcctagacattggctctgcaaactcgctggacttccattcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaa |
361 |
Q |
| |
|
||||| | ||| | ||||||| | | ||||||||| ||||||||||||||||| || ||||||||| ||| |||| |||| ||| ||||| |
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|
| T |
4384513 |
aattttcccaccacttgttttcgcaaactgggtagacttccatgcctcggatgtgaacattgttctcaaagctcccttggtctcatgaagacagtataaa |
4384612 |
T |
|
| Q |
362 |
gt |
363 |
Q |
| |
|
|| |
|
|
| T |
4384613 |
gt |
4384614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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