View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0708_low_6 (Length: 367)
Name: NF0708_low_6
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 87 - 365
Target Start/End: Original strand, 7303309 - 7303588
Alignment:
| Q |
87 |
cataatggtgggttgagattaatacgtagaaagcttttgacacacttcaatttaccctcctgtg-ttgtcaatcacaagcttttgagagacttcaatcta |
185 |
Q |
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| T |
7303309 |
cataatggtgggttgagattaattcgtagaaagcttttgacacacttcaatttaccctccagaggttgccaatcacaagcttttgagagacttcaatcta |
7303408 |
T |
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| Q |
186 |
tcatccagaggttgcatatcaaagttgatcttttccactctctctttgagaatccgaatatcctccaaaacaatatccaaatcagcaagtgatttcatca |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7303409 |
tcatccagaggttgcatatcaaagttgatcttttccactctctctttgagaatccgaatatcctccaaaacaatatccaaatcagcaagtgatttcatca |
7303508 |
T |
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| Q |
286 |
agcannnnnnngcttcatcaacttctccttcatcaccagtaattgctactacttcctctttatcttcctttgcttcttct |
365 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7303509 |
agcatttttttgcttcatcaacttctccttcatcaccagtaattgctactacttcctctttatcttcctttacttcttct |
7303588 |
T |
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