View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0708_low_8 (Length: 366)
Name: NF0708_low_8
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0708_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 91 - 269
Target Start/End: Complemental strand, 38475143 - 38474965
Alignment:
| Q |
91 |
atgtatgatggcaaataaggtcctgcataataattcattatacatacattgataaaaccaaaatccaatttacctttcattgcaacttccacacagcacc |
190 |
Q |
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| T |
38475143 |
atgtatgacggcaaataaggtcctgcataataattcattatacatacattgataaaaccaaaatccaatttacctttcattgcaacttccacacagcacc |
38475044 |
T |
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| Q |
191 |
attaacctatctgggttataaggcatctcacatttgcataaccttcgaaacataaaagcaaaatcaaaaatatttattt |
269 |
Q |
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| T |
38475043 |
attaacctatccgggttataaggcatctcacatttgcataaccttcaaaacataaaagcaaaatcaaaaatatttattt |
38474965 |
T |
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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 54012172 - 54012107
Alignment:
| Q |
290 |
gtgataaattgaaatctggcattctcttacaaagttgttgaagatttcaaagccttgttgatctctg |
356 |
Q |
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| T |
54012172 |
gtgataaattgaaatctggcattctcttacaaagttgttgaaga-ttcaaagccttgttgatctctg |
54012107 |
T |
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