View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0708_low_9 (Length: 363)

Name: NF0708_low_9
Description: NF0708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0708_low_9
NF0708_low_9
[»] chr4 (1 HSPs)
chr4 (70-362)||(27588902-27589195)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 70 - 362
Target Start/End: Complemental strand, 27589195 - 27588902
Alignment:
Q  70 tcagatgaaagcatttgatccgatcctaatgaaaacaataagtaagataattaaattatataaataaatgatgatcgctaatgaaaaataatcataggaa 169  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27589195 tcagatgaaagcatttgaaccgatcctaatgaaaacaataagtaagataattaaaatatataaataaatgatgatcgctaatgaaaaataatcataggaa 27589096  T
Q  170 ttcatatgaaaatgcaagaagaaataattacataattgacataagaaagaataaaaatgcttaccaacgttgtctacgagtttctcttgcatgttgttta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27589095 ttcatatgaaaatgcaagaagaaataattacataattgacataagaaagaataaaaatgcttaccaacgttgtctacgagtttctcttgcatgttgttta 27588996  T
Q  270 cc-nnnnnnnggtctcctcatctttgagagacacttcatgagcacgcttattttctgacattgtaatcaactagatagatattgttggacatgc 362  Q
    ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||    
T  27588995 ccttttttttggtctcctcatctttgagagacacttcatgagcacgcttattttctgacattgtgatcaactagatagatttggttgcacatgc 27588902  T

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