View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0709_high_4 (Length: 251)

Name: NF0709_high_4
Description: NF0709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0709_high_4
NF0709_high_4
[»] chr7 (4 HSPs)
chr7 (6-251)||(15129139-15129396)
chr7 (105-186)||(15107633-15107714)
chr7 (201-234)||(15107573-15107606)
chr7 (72-116)||(20472221-20472265)
[»] chr8 (5 HSPs)
chr8 (20-247)||(18963307-18963543)
chr8 (16-140)||(21354577-21354701)
chr8 (16-133)||(7950490-7950607)
chr8 (21-123)||(7941526-7941628)
chr8 (21-124)||(7947077-7947180)
[»] chr3 (5 HSPs)
chr3 (45-121)||(12110239-12110315)
chr3 (51-121)||(30056021-30056091)
chr3 (45-122)||(12128074-12128151)
chr3 (72-121)||(30157278-30157327)
chr3 (49-121)||(12123914-12123986)
[»] chr6 (3 HSPs)
chr6 (42-121)||(6802989-6803068)
chr6 (45-116)||(12837566-12837637)
chr6 (62-121)||(6785831-6785890)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 15129396 - 15129139
Alignment:
Q  6 gtcgaataatatcccaacttatgtcaatcccacatggattgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatg 105  Q
    |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15129396 gtcgaagaacatcccaacttatgtcaatcccacatagattgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatg 15129297  T
Q  106 gctggtgttttacctcaaacgttgaagccgaacgctacttcgatattctcattaatcctgcaacaaacaacttcctcaagactgtatc------------ 193  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||                
T  15129296 gctggtgttttacctctaacgttgaagccgaacgctacttcgagattctcattaatcctgcaacaaacaacttcctcaagactgtatctcactccattaa 15129197  T
Q  194 tggaaatggattcttgaagatgcctgtagagattgccacttaatcttgatatgtctat 251  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  15129196 tggaaatggattcttgaagatgcctgtagagattgcatcttaatcttgatatgtctat 15129139  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 15107714 - 15107633
Alignment:
Q  105 ggctggtgttttacctcaaacgttgaagccgaacgctacttcgatattctcattaatcctgcaacaaacaacttcctcaaga 186  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||  ||  |  ||| ||||||| |||||||||| ||||||    
T  15107714 ggctggtgttttacctctaacgctgaagcagaacgctacttcgaggttggctctaaccctgcaataaacaacttcttcaaga 15107633  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 15107606 - 15107573
Alignment:
Q  201 ggattcttgaagatgcctgtagagattgccactt 234  Q
    ||||||||||||||||||||||||||| ||||||    
T  15107606 ggattcttgaagatgcctgtagagatttccactt 15107573  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 20472221 - 20472265
Alignment:
Q  72 tgtgctcgttatcctaattctgatatcgaacatggctggtgtttt 116  Q
    ||||| |||||||||||||||||||  ||| ||||||||||||||    
T  20472221 tgtgcgcgttatcctaattctgataatgaatatggctggtgtttt 20472265  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 18963543 - 18963307
Alignment:
Q  20 caacttatgtcaatcccacatggattgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgttttacc 119  Q
    ||||||| |||||||  |||  || ||||||||||||||||  |||||||| ||||||  |||||||||||||||  |  ||||||||||||||||||||    
T  18963543 caacttaagtcaatctaacaacgactgcatcaagaagggaaccgggagtttatgtgcttattatcctaattctgaactgcaacatggctggtgttttacc 18963444  T
Q  120 tcaaacgttgaagccgaacgctacttcgatattctcattaatcctgcaacaaacaacttcctcaagactgtatc---------tggaaatggattcttga 210  Q
    || ||||||||||| |||| |||||| ||  ||||    || ||||||| ||||||||||||||||| | | ||         |||||| ||||| ||||    
T  18963443 tctaacgttgaagcagaacactactttgaggttctatccaaccctgcaataaacaacttcctcaagaatatctcttactccaatggaaaaggatttttga 18963344  T
Q  211 agatgcctgtagagattgccacttaatcttgatatgt 247  Q
    |||||||||| ||||||||||||||||||||||||||    
T  18963343 agatgcctgtggagattgccacttaatcttgatatgt 18963307  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 21354577 - 21354701
Alignment:
Q  16 atcccaacttatgtcaatcccacatggattgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgttt 115  Q
    |||| |||||||||||||| |||||||| |||||||| ||||||| |||||| |||||   |  ||||||||||||||| ||| ||||||||| ||||||    
T  21354577 atcctaacttatgtcaatctcacatggactgcatcaacaagggaagtgggagcttctgcagttattatcctaattctgaaatccaacatggcttgtgttt 21354676  T
Q  116 tacctcaaacgttgaagccgaacgc 140  Q
    ||| || || |||||||| ||||||    
T  21354677 tacatctaaggttgaagcagaacgc 21354701  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 7950490 - 7950607
Alignment:
Q  16 atcccaacttatgtcaatcccacatggattgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgttt 115  Q
    |||| ||||||||||| || |||   |||||||  ||||||| || ||| || || ||||| |||||||||||| |||||||||||||||| ||||||||    
T  7950490 atcctaacttatgtcagtctcacgctgattgcacgaagaaggaaagtggaagcttttgtgcccgttatcctaatcctgatatcgaacatggatggtgttt 7950589  T
Q  116 tacctcaaacgttgaagc 133  Q
    | |||| ||| |||||||    
T  7950590 ttcctctaactttgaagc 7950607  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 7941526 - 7941628
Alignment:
Q  21 aacttatgtcaatcccacatggattgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgttttacct 120  Q
    |||||||||||||| ||    |||||||  ||||| |||| ||| || || |||||||||||||||||| ||||||||||| |||| ||||||||| |||    
T  7941526 aacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcgaatatggatggtgtttttcct 7941625  T
Q  121 caa 123  Q
    |||    
T  7941626 caa 7941628  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 7947077 - 7947180
Alignment:
Q  21 aacttatgtcaatcccacatggattgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgttttacct 120  Q
    |||||||||||||| ||    |||||||  ||||| |||| ||| || || |||||||||||||||||| |||||||| || |||| ||||||||| |||    
T  7947077 aacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcaaatatggatggtgtttttcct 7947176  T
Q  121 caaa 124  Q
    ||||    
T  7947177 caaa 7947180  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 12110239 - 12110315
Alignment:
Q  45 tgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgttttacctc 121  Q
    |||||||||||||||| |||||  || |||||||||||| ||||| ||||| ||||| |||| ||||||||| ||||    
T  12110239 tgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatgtcgaatatgggtggtgttttgcctc 12110315  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 30056091 - 30056021
Alignment:
Q  51 aagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgttttacctc 121  Q
    |||||||| | ||||| ||| |||||||||| | |||||||||||||| || |||||||||||||| ||||    
T  30056091 aagaagggtagtgggaatttttgtgctcgttttgctaattctgatatcaaatatggctggtgttttgcctc 30056021  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 12128074 - 12128151
Alignment:
Q  45 tgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgttttacctca 122  Q
    |||||||||||||||| ||| |  || |||||||||||| |||||  |||||||||| |||| ||||||||| |||||    
T  12128074 tgcatcaagaagggaagtggaaacttttgtgctcgttatgctaatgatgatatcgaatatggatggtgttttgcctca 12128151  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 30157327 - 30157278
Alignment:
Q  72 tgtgctcgttatcctaattctgatatcgaacatggctggtgttttacctc 121  Q
    |||||||| | |||||||||||||||| || |||||||||||||| ||||    
T  30157327 tgtgctcgctttcctaattctgatatcaaatatggctggtgttttgcctc 30157278  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 12123914 - 12123986
Alignment:
Q  49 tcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgttttacctc 121  Q
    |||||||||||| ||| |  || ||||| |||||| ||||| ||||||||||| |||| ||||||||| ||||    
T  12123914 tcaagaagggaagtggaaacttttgtgcccgttatgctaatgctgatatcgaatatggatggtgttttgcctc 12123986  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 6803068 - 6802989
Alignment:
Q  42 gattgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgttttacctc 121  Q
    |||||||  ||||| |||| ||||||||| || |||||||||||||||  |||||||||| |||| ||||||||| ||||    
T  6803068 gattgcacgaagaaaggaagtgggagtttttgcgctcgttatcctaatcttgatatcgaatatggatggtgttttgcctc 6802989  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 12837637 - 12837566
Alignment:
Q  45 tgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgtttt 116  Q
    |||| ||||||||||| |||||| || || ||||||| |||||||||||||| | || ||||||||||||||    
T  12837637 tgcaacaagaagggaagtgggagcttttgcgctcgttctcctaattctgataacaaaaatggctggtgtttt 12837566  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 6785890 - 6785831
Alignment:
Q  62 tgggagtttctgtgctcgttatcctaattctgatatcgaacatggctggtgttttacctc 121  Q
    ||||||||| |||||||||||||||||| || |||||||| |||| |||| |||| ||||    
T  6785890 tgggagtttttgtgctcgttatcctaatcctaatatcgaatatggatggtattttgcctc 6785831  T

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