View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0709_low_1 (Length: 523)
Name: NF0709_low_1
Description: NF0709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0709_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 38 - 517
Target Start/End: Original strand, 26432818 - 26433323
Alignment:
| Q |
38 |
gacaagtgaatatctcgttatagaaactttcatgttgagtttgtttacgaacaagtaaatgatgtt---catattcttgtaaatgcgacaacaacttgag |
134 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||| ||| ||||| |||||||||||||||||||||| |||| ||| |
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| T |
26432818 |
gacaagtaaatatctcgttatagaaacttccatgttgagtttgtctacggacaagtgaattatgttgttcatattcttgtaaatgcgacaataactcgag |
26432917 |
T |
|
| Q |
135 |
ctggtttttaaattttgggtgatataccacattttattaaactcaatannnnnnnggtgacgaaattgaactcaatatta-------------------- |
214 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
26432918 |
ctggtttttaaattttggatgatataccacattttattaaactcaatatttttttg-tgacgaaattgaactcaatattattattaatgaaagggtagca |
26433016 |
T |
|
| Q |
215 |
ctaagcaagaggccagtcttatgtttatgataatcaaatttatattaatcgtattattgtccttccgtcccagtgtttgtcctaatatctgtcctattag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26433017 |
ctaagcaagaggccagtcttatgtttatgataatcaaatttataataatcgtattattgtcgttccgtcccagtgtttgtcctaatatctgtcctattag |
26433116 |
T |
|
| Q |
315 |
tctaataattcaaaagcatgcttttgatgatatagtttgtctcacatgaatccctaaatcaagttaaaattataatttgttaatgtgcagatgtgacgac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26433117 |
tctaataattcaaaagcatgcttttgatgatatagtttgtctcacatgaatccctaaatcaagttaaaattataatttgttaatgtgcagatgtgacgac |
26433216 |
T |
|
| Q |
415 |
caatccattgcaattgtttgatctgcataattaacctgctcagtttaattatttttt----ggtggtgggttatttgattgattagctcttaattaaaat |
510 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
26433217 |
caatccattgcaattgtttgatctgcgtaattaacctactcagtttaattattttttgtggggtggtgggttatttgattgattagctcctaattaaaat |
26433316 |
T |
|
| Q |
511 |
ttcaatg |
517 |
Q |
| |
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||||||| |
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| T |
26433317 |
ttcaatg |
26433323 |
T |
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