View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0709_low_2 (Length: 448)
Name: NF0709_low_2
Description: NF0709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0709_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 68 - 435
Target Start/End: Complemental strand, 2260687 - 2260313
Alignment:
| Q |
68 |
aggttgagtgcaactttacttggaatagttcatgcaatttgttcttgagatagcaatattcatgttccagcatttccaatgctctgaagcatctgcaatt |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2260687 |
aggttgagtgcaactttacttggaatagttcatgcaatttgttcttgagatagcaatattcatgttccagcatttccaacgctctgaagcatctgcaatt |
2260588 |
T |
|
| Q |
168 |
ggttggataggcacagaaatgtaacagttagttaattaaaaaaccctagtattttgtgctacattatataatgtttgatatcaccatagatatgtcaaaa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
2260587 |
ggttggataggcacagaaatgtaacagttagttaattaaaaaaacctagtattttgtgctacattagatagtgtttgatatcaccatagatatgtcaaaa |
2260488 |
T |
|
| Q |
268 |
t-------acccactgtgagttttctgaaactacaatttgtaccttctacaaaatcacggtgattcttgcgtatccaccttaatatcaaacatacactaa |
360 |
Q |
| |
|
| | ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2260487 |
ttacaacgatccactgtgatttttcagaaactacaatttgtaccttctacaaaattacggtgattcttgcgtatccaccttaatatcaaacatacactaa |
2260388 |
T |
|
| Q |
361 |
aattgcacgaattcgtaccaataaagaaagcacgaataaagagggagtataggcacccacccagcacggttgttc |
435 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2260387 |
aattgcatgaattcgtaccaataaagaatgcacgaataaagagggagtataggcacccacccagcacggttgttc |
2260313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 44733329 - 44733417
Alignment:
| Q |
79 |
aactttacttggaatagttcatgcaatttgttcttgagatagcaatattcatgttccagcatttccaatgctctgaagcatctgcaatt |
167 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||| |||| || ||||||||||| |
|
|
| T |
44733329 |
aactttacttggaagagttcgtgcaatttgttcttaagataacaatattcatgctccagcatttccaacgctcgcaaacatctgcaatt |
44733417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 36322713 - 36322770
Alignment:
| Q |
269 |
acccactgtgagttttctgaaactacaatttgtaccttctacaaaatcacggtgattc |
326 |
Q |
| |
|
|||||| |||| ||||| |||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
36322713 |
acccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgattc |
36322770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 740 times since January 2019
Visitors: 4390