View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0709_low_3 (Length: 408)

Name: NF0709_low_3
Description: NF0709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0709_low_3
NF0709_low_3
[»] chr3 (4 HSPs)
chr3 (75-379)||(1345162-1345466)
chr3 (75-379)||(31135876-31136180)
chr3 (84-255)||(7577785-7577956)
chr3 (282-379)||(7577661-7577758)
[»] chr8 (3 HSPs)
chr8 (75-379)||(14722418-14722722)
chr8 (84-379)||(28185128-28185423)
chr8 (105-379)||(12219281-12219555)
[»] chr2 (3 HSPs)
chr2 (75-369)||(34660936-34661231)
chr2 (281-364)||(31519791-31519874)
chr2 (75-124)||(18254289-18254338)
[»] chr6 (1 HSPs)
chr6 (75-243)||(7704989-7705157)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 75 - 379
Target Start/End: Original strand, 1345162 - 1345466
Alignment:
Q  75 attatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgt 174  Q
    |||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1345162 attatattaaacatgcatgcttttaaaacagtcctgcactgaggagaccattttctatctaaaatcttcaaaaaatcaaaacagttggcgaattgcatgt 1345261  T
Q  175 ttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacataatattataaaaaga 274  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1345262 ttatgtttataatagagagcagccagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacagaatattataaaaaga 1345361  T
Q  275 gaaccatgatggaaactgaaaacctctagacaaaatattttcatctaatggaactttgttatgcaagatcctccaaaccaacagagatttggttggagga 374  Q
    | ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1345362 gcaccatgatggaaactgaaaacctctagacaaaagattttcctctaatggaactttgttatgcaagatcctccaaaccaatagagatttggttggagga 1345461  T
Q  375 atatc 379  Q
    |||||    
T  1345462 atatc 1345466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 75 - 379
Target Start/End: Complemental strand, 31136180 - 31135876
Alignment:
Q  75 attatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgt 174  Q
    |||||| |||||| ||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||  ||||    
T  31136180 attatattaaacatgcaagcttttagaacagtcctgcactgaggagaccagtttctatccaaaatcttcaaaaaatcaaaacagttggtgaattatatgt 31136081  T
Q  175 ttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacataatattataaaaaga 274  Q
    ||||||||||| |||||||||  |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||  |||||  || ||||    
T  31136080 ttatgtttatagtagagagcaaccagttccacagatgcatagcaaaagaccactcaaaaaataagtggaaggtagattcacacaagatattgcaagaaga 31135981  T
Q  275 gaaccatgatggaaactgaaaacctctagacaaaatattttcatctaatggaactttgttatgcaagatcctccaaaccaacagagatttggttggagga 374  Q
    | ||  ||||||||| |||||||| || ||||||| |||||| |||  ||| |||||||||||||| |||||| |||||||||| |||||||||||||||    
T  31135980 gcactgtgatggaaattgaaaacccctggacaaaagattttcctctgttggcactttgttatgcaaaatcctctaaaccaacagggatttggttggagga 31135881  T
Q  375 atatc 379  Q
    |||||    
T  31135880 atatc 31135876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 255
Target Start/End: Complemental strand, 7577956 - 7577785
Alignment:
Q  84 aacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgtttatgttta 183  Q
    |||| ||||||||| |  || |||||||||||  ||||||| ||||| |||||||  |||||||| |||| |||  ||   |||||||||||||| ||||    
T  7577956 aacatgcatgctttcaggacggtcctgcactgcggagaccagtttctctccaaaagattcaaaaagtcaagacacgtgataaattgcatgtttatattta 7577857  T
Q  184 taatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcac 255  Q
     || ||||| ||  | || ||||||||||||||||||||  || |||||||| ||||||||||||| |||||    
T  7577856 aaaaagagaacaacccgtaccacaaatgcatagcaaaaggacattcaaaaaataagtggaaggtagtttcac 7577785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 379
Target Start/End: Complemental strand, 7577758 - 7577661
Alignment:
Q  282 gatggaaactgaaaacctctagacaaaatattttcatctaatggaactttgttatgcaagatcctccaaaccaacagagatttggttggaggaatatc 379  Q
    |||||||||||||| ||||| || | ||  ||||||||   |||||| || ||||||| ||||| ||||||||| || ||||||||||||||||||||    
T  7577758 gatggaaactgaaaccctctggatataaggttttcatccgttggaaccttattatgcatgatccgccaaaccaaaagggatttggttggaggaatatc 7577661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 75 - 379
Target Start/End: Complemental strand, 14722722 - 14722418
Alignment:
Q  75 attatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgt 174  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||| |    
T  14722722 attatattaaacatgcatgcttttaaaacagtcctgcactgaagagaccaatttctatccaaaattttcaaaaaatcaaaacagttggtgaactgcattt 14722623  T
Q  175 ttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacataatattataaaaaga 274  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || |    
T  14722622 ttatgtttataatagagagaagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacagaatattacaagaaaa 14722523  T
Q  275 gaaccatgatggaaactgaaaacctctagacaaaatattttcatctaatggaactttgttatgcaagatcctccaaaccaacagagatttggttggagga 374  Q
    | |||||||||||| |||||||||||| ||||||| ||||| ||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14722522 gcaccatgatggaagctgaaaacctctggacaaaagatttttatctgttggaactttgttatgcaagatcctccaaaccaactgagatttggttggagga 14722423  T
Q  375 atatc 379  Q
    |||||    
T  14722422 atatc 14722418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 84 - 379
Target Start/End: Original strand, 28185128 - 28185423
Alignment:
Q  84 aacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgtttatgttta 183  Q
    |||| ||| ||||| | ||||||||||||| |  ||||||| |||||||| | ||||||| |||| || | ||| |||  |||||||||| |||||||      
T  28185128 aacatgcaagctttgagaacagtcctgcaccgcggagaccaatttctatctagaatcttccaaaagtctagacaattgctgaattgcatgcttatgttag 28185227  T
Q  184 taatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacataatattataaaaagagaaccatga 283  Q
    ||||| ||| ||  || ||||||||||||||||||||||  |||||||||||||||||||| |||| ||||| |  || |  | || | ||| || | ||    
T  28185228 taatatagaacaaccaattccacaaatgcatagcaaaaggacactcaaaaaacaagtggaaagtagtttcaccctgaagaaaacaagatgagcacaaaga 28185327  T
Q  284 tggaaactgaaaacctctagacaaaatattttcatctaatggaactttgttatgcaagatcctccaaaccaacagagatttggttggaggaatatc 379  Q
    |||||| ||||| ||||| |||| ||  ||||||||   |||||| || ||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  28185328 tggaaattgaaaccctctggacagaaggttttcatcagttggaaccttattatgcatgatccgccaaaccaaaagagatttggttggaggaatatc 28185423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 379
Target Start/End: Original strand, 12219281 - 12219555
Alignment:
Q  105 gtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgtttatgtttataatagagagcagtcagttcc 204  Q
    |||||||||||  || |||| ||||| |||||||  |||||||| |||| |||  ||   |||||||||||||| |||| |||||||| ||  |||||||    
T  12219281 gtcctgcactgcggataccagtttctctccaaaagattcaaaaagtcaagacacgtgataaattgcatgtttatatttaaaatagagaacaaccagttcc 12219380  T
Q  205 acaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacataatattataaaaagagaaccatgatggaaactgaaaacctctaga 304  Q
    ||||||||||||||||||  || |||||||| ||||||||||||| ||||| |  ||    | || | ||| |  | |||||||||||||| ||||| ||    
T  12219381 acaaatgcatagcaaaaggacattcaaaaaataagtggaaggtagtttcaccctgaagggaacaagatgagcataaagatggaaactgaaaccctctgga 12219480  T
Q  305 caaaatattttcatctaatggaactttgttatgcaagatcctccaaaccaacagagatttggttggaggaatatc 379  Q
       ||  |||||||    |||||| || ||||||| ||||| ||||||||| || ||||||||||||||||||||    
T  12219481 tgtaaggttttcattcgttggaaccttattatgcatgatccgccaaaccaaaagggatttggttggaggaatatc 12219555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 75 - 369
Target Start/End: Complemental strand, 34661231 - 34660936
Alignment:
Q  75 attatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaa-tcaaaacagttggcgaattgcatg 173  Q
    |||||| |||||| ||| ||||||| ||||||||| |||| | ||||||| |||||||||||||||||||||||| |||||||| |||| |||||| |||    
T  34661231 attatattaaacatgcaagcttttagaacagtcctacactaaggagaccagtttctatccaaaatcttcaaaaaaatcaaaacaattggtgaattgtatg 34661132  T
Q  174 tttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacataatattataaaaag 273  Q
    |||||||||||| |||||||||  |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||  || ||  || |||    
T  34661131 tttatgtttatagtagagagcaaccagttccacagatgcatagcaaaagagcactcaaaaaataagtggaaggtagattcacacaagatgttgcaagaag 34661032  T
Q  274 agaaccatgatggaaactgaaaacctctagacaaaatattttcatctaatggaactttgttatgcaagatcctccaaaccaacagagatttggttg 369  Q
    || ||  ||||||||| |||||||| || ||||| | |||||||| |  ||| ||||||||||| || ||||||||||||||||| ||||||||||    
T  34661031 agcactgtgatggaaattgaaaacccctggacaagagattttcatttgttggcactttgttatgaaaaatcctccaaaccaacagggatttggttg 34660936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 31519791 - 31519874
Alignment:
Q  281 tgatggaaactgaaaacctctagacaaaatattttcatctaatggaactttgttatgcaagatcctccaaaccaacagagattt 364  Q
    |||||| |||||| |||||||||| || | ||| ||||||  ||||| ||||||||||||| | ||||||||||  ||||||||    
T  31519791 tgatgggaactgacaacctctagaaaataaattgtcatctgttggaagtttgttatgcaagcttctccaaaccatgagagattt 31519874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 18254289 - 18254338
Alignment:
Q  75 attatactaaacaagcatgcttttaaaacagtcctgcactgaagagacca 124  Q
    |||||| | |||| ||| |||||||||||||||||||||||| |||||||    
T  18254289 attatattgaacatgcaagcttttaaaacagtcctgcactgaggagacca 18254338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 75 - 243
Target Start/End: Complemental strand, 7705157 - 7704989
Alignment:
Q  75 attatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgt 174  Q
    |||||| |||||| ||| ||||||| |||||||||||||||| ||||||  ||||||||||||||||||||||||||| ||||||||| |||||   |||    
T  7705157 attatattaaacatgcaagcttttagaacagtcctgcactgaggagaccggtttctatccaaaatcttcaaaaaatcagaacagttggtgaattttgtgt 7705058  T
Q  175 ttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtgga 243  Q
    |||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||| |||||||    
T  7705057 ttatgtttataatagagagcaaccagttccatagatgcatagcaaaagagcactcaaaaaataagtgga 7704989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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