View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0709_low_4 (Length: 368)

Name: NF0709_low_4
Description: NF0709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0709_low_4
NF0709_low_4
[»] chr7 (5 HSPs)
chr7 (68-318)||(28117269-28117519)
chr7 (71-164)||(30284315-30284409)
chr7 (132-207)||(28117221-28117297)
chr7 (126-305)||(38947452-38947632)
chr7 (71-147)||(45266756-45266834)
[»] chr1 (2 HSPs)
chr1 (94-209)||(11803114-11803229)
chr1 (121-209)||(15826427-15826518)
[»] chr3 (2 HSPs)
chr3 (114-213)||(43263802-43263902)
chr3 (94-159)||(22850933-22850998)
[»] chr6 (2 HSPs)
chr6 (71-281)||(12479233-12479444)
chr6 (147-230)||(5720608-5720692)
[»] chr5 (2 HSPs)
chr5 (110-219)||(34835278-34835388)
chr5 (94-181)||(11713177-11713264)
[»] chr8 (2 HSPs)
chr8 (75-213)||(27823147-27823286)
chr8 (110-187)||(35199741-35199818)
[»] chr4 (2 HSPs)
chr4 (75-230)||(45685745-45685903)
chr4 (122-166)||(9779392-9779436)
[»] chr2 (1 HSPs)
chr2 (71-150)||(34396502-34396582)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 68 - 318
Target Start/End: Original strand, 28117269 - 28117519
Alignment:
Q  68 aaattgatatgtcaataagatacatcaaattaactcgttttctaaaagttcattagacgttaattttgatgcatttcattgacatatcaaattatatccg 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28117269 aaattgatatgtcaataagatacatcaaattaactcgttttctaaaagttcattagacgttaattttgatgcatttcattgacatatcaaattatatccg 28117368  T
Q  168 ataaatgtcaaattgtataacatgatctatattataatatctttcagttcaacaatcaattttacaatacgattacacgataaagaattatcatatttgt 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28117369 ataaatgtcaaattgtatagcatgatctatattataatatctttcagtccaacaatcagttttacaatacgattacacgataaagaattatcatatttgt 28117468  T
Q  268 catatattaagtttgacaccgcgatgtcaattgatcatgttccatatatat 318  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28117469 catatattaagtttgacaccgcgatatcaattgatcatgttccatatatat 28117519  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 30284409 - 30284315
Alignment:
Q  71 ttgatatgtcaataagatacatcaaa-ttaactcgttttctaaaagttcattagacgttaattttgatgcatttcattgacatatcaaattatat 164  Q
    ||||||||| |||||||||| | ||| |||||| ||||| ||||||||||| |||| |||||||| | | |||| ||| ||||||||||| ||||    
T  30284409 ttgatatgtgaataagatacgttaaaattaacttgttttttaaaagttcataagactttaattttaacgtatttaattaacatatcaaatgatat 30284315  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 28117297 - 28117221
Alignment:
Q  132 tttgatgcatttcattgacatatcaaattatatccgataaatgtcaaattgtata-acatgatctatattataatat 207  Q
    ||||||| || | ||||||||||||| |||| | |||||||| ||||||| |||| ||||||||||| |||||||||    
T  28117297 tttgatgtatcttattgacatatcaatttattttcgataaatatcaaattttatatacatgatctatgttataatat 28117221  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 305
Target Start/End: Complemental strand, 38947632 - 38947452
Alignment:
Q  126 gttaattttgatgcatttcattgacatatcaaattatatccgataaatgtcaaattgtata-acatgatctatattataatatctttcagttcaacaatc 224  Q
    ||||||||||||  || | |||||||||||||||    |||| | ||||| ||||| |||| ||||||||||| || |||||||||||| | ||||| ||    
T  38947632 gttaattttgatttatctaattgacatatcaaatggcttccggttaatgtaaaattttatacacatgatctatgttttaatatctttcaatccaacagtc 38947533  T
Q  225 aattttacaatacgattacacgataaagaattatcatatttgtcatatattaagtttgacaccgcgatgtcaattgatcat 305  Q
    ||||||  ||||   ||  || ||||| |||||||||   ||||||||||||| ||||| ||| || ||||  ||||||||    
T  38947532 aattttgtaatatagttctacaataaataattatcatcgatgtcatatattaaatttgaaaccacggtgtccgttgatcat 38947452  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 45266756 - 45266834
Alignment:
Q  71 ttgatatgtcaataagatacatc-aaattaactcg--ttttctaaaagttcattagacgttaattttgatgcatttcatt 147  Q
    ||||||||||||||||||||||| ||||||| | |  ||||| ||||||| | |||||| ||||||||||| ||||||||    
T  45266756 ttgatatgtcaataagatacatcaaaattaatttgttttttcaaaaagttta-tagacgctaattttgatgtatttcatt 45266834  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 11803114 - 11803229
Alignment:
Q  94 aaattaactcgttttctaaaagttcattagacgttaattttgatgcatttcattgacatatcaaattatatccgataaatgtcaaattgtata-ac-atg 191  Q
    ||||||||| ||||| ||||  || || |||||||||||||||||||| ||||||||| ||||| |||| | |||| ||||||||||| |||| || | |    
T  11803114 aaattaacttgttttttaaa--ttgataagacgttaattttgatgcatctcattgacaaatcaacttattttcgattaatgtcaaattttatatacaaag 11803211  T
Q  192 atctatattataatatct 209  Q
    ||||||||||||||||||    
T  11803212 atctatattataatatct 11803229  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 15826427 - 15826518
Alignment:
Q  121 tagacgttaattttgatgcatttcattgacatatcaaattatatccgataaatgtcaaattgtata---acatgatctatattataatatct 209  Q
    ||||| |||||||| ||  || ||||||||||||||||| || |  ||| ||||||||||| ||||   ||||||| |||||||||||||||    
T  15826427 tagacattaattttaatttatctcattgacatatcaaataatttatgattaatgtcaaattttatatacacatgatttatattataatatct 15826518  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 43263802 - 43263902
Alignment:
Q  114 agttcattagacgttaattttgatgcatttcattgacatatcaaattatatccgataaatgtcaaattgtata-acatgatctatattataatatctttc 212  Q
    ||||||| ||||||||||||||||  || |||||| |||||||||| ||||  ||| ||||||| ||| | || ||||||||||||||||||||| ||||    
T  43263802 agttcataagacgttaattttgatttatctcattgccatatcaaataatatatgattaatgtcatattttgtagacatgatctatattataatatgtttc 43263901  T
Q  213 a 213  Q
    |    
T  43263902 a 43263902  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 22850998 - 22850933
Alignment:
Q  94 aaattaactcgttttctaaaagttcattagacgttaattttgatgcatttcattgacatatcaaat 159  Q
    |||||||||| |||  ||||||||||| |||| ||||||||||||||| || ||||||| ||||||    
T  22850998 aaattaactcatttgataaaagttcataagacattaattttgatgcatctcgttgacatgtcaaat 22850933  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 281
Target Start/End: Original strand, 12479233 - 12479444
Alignment:
Q  71 ttgatatgtcaataagatacatcaaattaactcgttttctaaaagttcattagacgttaattttgatgcatttcattgacatatcaaattatatccgata 170  Q
    ||||||||||||||| | |  | ||||| |||||||||  ||||||  || | || |||||||||||| ||  |||||||| ||||| | |||||||||     
T  12479233 ttgatatgtcaataaaaaaattaaaatttactcgtttttcaaaagtgaatgataccttaattttgatgtatcacattgacacatcaactgatatccgatt 12479332  T
Q  171 aatgtcaaattgtataa-catgatctatattataatatctttcagttcaacaatcaattttacaatacgattacacgataaagaattatcatatttgtca 269  Q
    |||| ||| || ||||  |||| ||||||| ||||||||||| | |  |||  ||||||||| |||||  |||  |||||||||||||||  || || ||    
T  12479333 aatgacaatttttatagtcatgttctatataataatatcttttaatctaaccttcaattttaaaatacatttatccgataaagaattatcgaatatgcca 12479432  T
Q  270 tatattaagttt 281  Q
    ||||||||||||    
T  12479433 tatattaagttt 12479444  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 5720608 - 5720692
Alignment:
Q  147 tgacatatcaaattatatccgataaatgtcaaattgtata-acatgatctatattataatatctttcagttcaacaatcaatttt 230  Q
    ||||||||||||| || |  |||  |||||||||| |||| ||||| |||||  ||| |||||||||| ||||||||||||||||    
T  5720608 tgacatatcaaatgatttatgattcatgtcaaattttatagacatggtctatgctattatatctttcaattcaacaatcaatttt 5720692  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 34835388 - 34835278
Alignment:
Q  110 taaaagttcattagacgttaattttgatgcatttcattgacatatcaaattatatccgataaatgtcaaattgtat-aacatgatctatattataatatc 208  Q
    |||||||| || |||| |||||||||||||| ||||||| || ||||||| ||||||||| ||| ||||||| ||| |||| ||||||| | || ||| |    
T  34835388 taaaagtttataagactttaattttgatgcaattcattggcacatcaaatgatatccgattaatatcaaattttataaacaagatctatgtgatgatagc 34835289  T
Q  209 tttcagttcaa 219  Q
    ||||| |||||    
T  34835288 tttcaattcaa 34835278  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 11713264 - 11713177
Alignment:
Q  94 aaattaactcgttttctaaaagttcattagacgttaattttgatgcatttcattgacatatcaaattatatccgataaatgtcaaatt 181  Q
    ||||||||| |||||  |||||||||| ||||||||||||||| | || | |||||||||||| || || | |||| ||||| |||||    
T  11713264 aaattaacttgtttttcaaaagttcataagacgttaattttgaggtatctaattgacatatcatatgatttacgattaatgtaaaatt 11713177  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 213
Target Start/End: Original strand, 27823147 - 27823286
Alignment:
Q  75 tatgtcaataagatacatcaaa-ttaactcgttttctaaaagttcattagacgttaattttgatgcatttcattgacatatcaaattatatccgataaat 173  Q
    ||||||||||| |||||||||| ||||||| |||| ||||||||| | |||| |||||||| | | || | |||||||||||| || || |||| | |||    
T  27823147 tatgtcaataaaatacatcaaaattaactcatttt-taaaagttcttaagacattaattttaaggtatctaattgacatatcatatgatttccggttaat 27823245  T
Q  174 gtcaaattgtataac-atgatctatattataatatctttca 213  Q
    || |||||  ||||  ||||||||| |||||||||||||||    
T  27823246 gtaaaatttcataaatatgatctatgttataatatctttca 27823286  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 35199741 - 35199818
Alignment:
Q  110 taaaagttcattagacgttaattttgatgcatttcattgacatatcaaattatatccgataaatgtcaaattgtataa 187  Q
    |||||||| || |||| ||||||||||| || || |||| |||||||||| ||||||||| ||||| ||||| |||||    
T  35199741 taaaagtttataagacattaattttgatacaatttattggcatatcaaatgatatccgattaatgtaaaattttataa 35199818  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 45685903 - 45685745
Alignment:
Q  75 tatgtcaataagatacatca-aattaactcgttttctaaaagttcattagacgttaattttga-tgcatttcattgacatatcaaattatatccgataaa 172  Q
    |||||||||||||||   || ||||||||| |||| |||||||||||  ||| |||||||  | ||||| ||||||| ||||||||| || ||  || ||    
T  45685903 tatgtcaataagatagtacataattaactcattttttaaaagttcataggacattaatttcaaatgcatctcattgaaatatcaaatgatttcttattaa 45685804  T
Q  173 tgtcaaattgtataa-catgatctatattataatatctttcagttcaacaatcaatttt 230  Q
    | ||||||| ||||| ||| ||||||||||||| |||||||| |  ||||||| |||||    
T  45685803 tatcaaattttataaacattatctatattataacatctttcaatctaacaatcgatttt 45685745  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 9779392 - 9779436
Alignment:
Q  122 agacgttaattttgatgcatttcattgacatatcaaattatatcc 166  Q
    ||||||||||||| |||||  ||||||||||||||||| ||||||    
T  9779392 agacgttaattttaatgcaactcattgacatatcaaatgatatcc 9779436  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 34396582 - 34396502
Alignment:
Q  71 ttgatatgtcaataagatacatcaaa-ttaactcgttttctaaaagttcattagacgttaattttgatgcatttcattgac 150  Q
    ||||||||| ||||||||| | |||| |||||| |||||  |||| |||||  |||||||||||||||| |||||||||||    
T  34396582 ttgatatgttaataagatataccaaaattaacttgtttttcaaaaattcatatgacgttaattttgatgtatttcattgac 34396502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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