View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0709_low_7 (Length: 282)

Name: NF0709_low_7
Description: NF0709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0709_low_7
NF0709_low_7
[»] chr4 (11 HSPs)
chr4 (1-84)||(15747423-15747506)
chr4 (1-84)||(24046346-24046429)
chr4 (1-84)||(4830024-4830107)
chr4 (1-84)||(4833319-4833402)
chr4 (24-84)||(18230843-18230903)
chr4 (1-48)||(2584015-2584062)
chr4 (1-48)||(13447684-13447731)
chr4 (55-84)||(14912188-14912217)
chr4 (35-67)||(3863201-3863233)
chr4 (35-67)||(3871958-3871990)
chr4 (221-281)||(23293020-23293080)
[»] chr7 (9 HSPs)
chr7 (1-84)||(831500-831583)
chr7 (1-84)||(1196680-1196763)
chr7 (1-84)||(34958664-34958747)
chr7 (1-84)||(11662208-11662291)
chr7 (1-84)||(13256795-13256879)
chr7 (206-280)||(27944991-27945065)
chr7 (1-48)||(3288647-3288694)
chr7 (35-84)||(21518206-21518256)
chr7 (206-251)||(40132024-40132069)
[»] chr5 (9 HSPs)
chr5 (1-84)||(23539868-23539951)
chr5 (185-282)||(38816728-38816818)
chr5 (206-281)||(19820428-19820503)
chr5 (206-270)||(22013364-22013428)
chr5 (221-280)||(21137654-21137713)
chr5 (36-84)||(24276398-24276447)
chr5 (36-84)||(24385766-24385815)
chr5 (33-80)||(21979965-21980013)
chr5 (224-281)||(21191090-21191147)
[»] chr3 (10 HSPs)
chr3 (1-84)||(10833173-10833258)
chr3 (1-84)||(10952597-10952680)
chr3 (8-84)||(18893784-18893860)
chr3 (1-84)||(10953526-10953609)
chr3 (12-84)||(18898077-18898149)
chr3 (206-270)||(8842280-8842344)
chr3 (221-281)||(28917966-28918026)
chr3 (221-280)||(24205076-24205135)
chr3 (207-281)||(32429414-32429488)
chr3 (215-259)||(10335342-10335386)
[»] scaffold0819 (1 HSPs)
scaffold0819 (1-77)||(1-77)
[»] chr2 (6 HSPs)
chr2 (4-84)||(41300799-41300879)
chr2 (1-80)||(21072555-21072634)
chr2 (206-270)||(33519736-33519800)
chr2 (35-76)||(23003201-23003242)
chr2 (221-281)||(4332891-4332951)
chr2 (221-281)||(18276486-18276546)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-84)||(147724-147807)
[»] chr6 (12 HSPs)
chr6 (1-84)||(29415423-29415506)
chr6 (225-282)||(10294076-10294133)
chr6 (221-281)||(5000660-5000720)
chr6 (206-281)||(853893-853968)
chr6 (33-76)||(29847177-29847220)
chr6 (206-281)||(30866178-30866253)
chr6 (206-259)||(8365575-8365628)
chr6 (24-84)||(1640061-1640121)
chr6 (221-281)||(7938081-7938141)
chr6 (221-281)||(9107404-9107464)
chr6 (8-76)||(9184873-9184939)
chr6 (221-281)||(16766662-16766722)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-84)||(391433-391516)
[»] chr1 (9 HSPs)
chr1 (1-84)||(28313451-28313533)
chr1 (221-281)||(40917716-40917776)
chr1 (222-281)||(398799-398858)
chr1 (229-281)||(6427323-6427375)
chr1 (219-281)||(10572623-10572685)
chr1 (55-84)||(20805425-20805454)
chr1 (33-84)||(18271423-18271473)
chr1 (33-84)||(18276077-18276127)
chr1 (219-259)||(48040518-48040558)
[»] scaffold0207 (1 HSPs)
scaffold0207 (40-84)||(9758-9802)
[»] scaffold0004 (1 HSPs)
scaffold0004 (35-84)||(385260-385310)
[»] scaffold0306 (1 HSPs)
scaffold0306 (205-281)||(13349-13425)
[»] scaffold0152 (1 HSPs)
scaffold0152 (205-281)||(21902-21978)
[»] scaffold0053 (1 HSPs)
scaffold0053 (221-281)||(8763-8823)
[»] chr8 (7 HSPs)
chr8 (206-270)||(25192392-25192456)
chr8 (215-281)||(926822-926888)
chr8 (223-281)||(29510338-29510396)
chr8 (224-281)||(22651944-22652001)
chr8 (35-76)||(24980223-24980264)
chr8 (35-67)||(19990018-19990050)
chr8 (24-84)||(22815486-22815546)
[»] scaffold0475 (1 HSPs)
scaffold0475 (221-280)||(3281-3340)
[»] scaffold0223 (1 HSPs)
scaffold0223 (206-281)||(20122-20197)
[»] scaffold0201 (1 HSPs)
scaffold0201 (24-67)||(27396-27439)
[»] scaffold0007 (1 HSPs)
scaffold0007 (221-280)||(225303-225362)
[»] scaffold0334 (1 HSPs)
scaffold0334 (33-80)||(2223-2271)
[»] scaffold0124 (1 HSPs)
scaffold0124 (30-84)||(35334-35388)
[»] scaffold0003 (1 HSPs)
scaffold0003 (221-270)||(241559-241608)
[»] scaffold0562 (1 HSPs)
scaffold0562 (35-67)||(2778-2810)
[»] scaffold0181 (1 HSPs)
scaffold0181 (7-80)||(25393-25467)
[»] scaffold0117 (1 HSPs)
scaffold0117 (35-80)||(40122-40168)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 15747423 - 15747506
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15747423 aggttggaaaaatagaaactgagagtcagaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 15747506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 24046346 - 24046429
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24046346 aggttggaaaaatagaaactgagagtcataaccagtttcacgtacaaacagaggttttgggagaaaacaagagaaagctaggag 24046429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4830024 - 4830107
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4830024 aggttggaaaaatagaaactaagagtcagaaccagtttcacgtacaaacagaggttttgggagaaaacaagagaaagctaggag 4830107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4833319 - 4833402
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4833319 aggttggaaaaatagaaactaagagtcagaaccagtttcacgtacaaacagaggttttgggagaaaacaagagaaagctaggag 4833402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 18230903 - 18230843
Alignment:
Q  24 agtcaaaaccagtttcacgtacaaacagagattttgggagaaaa--caagagaaagctaggag 84  Q
    ||||| || |||||||||||||||||||||  ||||||||||||  |||||||||||||||||    
T  18230903 agtcagaagcagtttcacgtacaaacagag--tttgggagaaaaaccaagagaaagctaggag 18230843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2584015 - 2584062
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaa 48  Q
    ||||||| |||||||||||||||||||| || |||||| |||||||||    
T  2584015 aggttgggaaaatagaaactgagagtcagaatcagttttacgtacaaa 2584062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13447731 - 13447684
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaa 48  Q
    ||||||| |||||||||||||||||||| || |||||| |||||||||    
T  13447731 aggttgggaaaatagaaactgagagtcagaatcagttttacgtacaaa 13447684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 14912217 - 14912188
Alignment:
Q  55 ttttgggagaaaacaagagaaagctaggag 84  Q
    ||||||||||||||||||||||||||||||    
T  14912217 ttttgggagaaaacaagagaaagctaggag 14912188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 3863201 - 3863233
Alignment:
Q  35 gtttcacgtacaaacagagattttgggagaaaa 67  Q
    ||||||||||||||||||| |||||||||||||    
T  3863201 gtttcacgtacaaacagagtttttgggagaaaa 3863233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 3871958 - 3871990
Alignment:
Q  35 gtttcacgtacaaacagagattttgggagaaaa 67  Q
    ||||||||||||||||||| |||||||||||||    
T  3871958 gtttcacgtacaaacagagtttttgggagaaaa 3871990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 23293080 - 23293020
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||||||||||| |||||| | ||||| |||||||  ||||||||| ||| ||||||    
T  23293080 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 23293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 831500 - 831583
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  831500 aggttggaaaaatagaaactgagagtcagaaccagtttcacgtacaaatagaggttttgggagaaaacaagagaaagctaggag 831583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 1196680 - 1196763
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  1196680 aggttggaaaaatagaaactgagagtcagaaccagtttcacgtacaaatagaggttttgggagaaaacaagagaaagctaggag 1196763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 34958747 - 34958664
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  34958747 aggttggaaaaatagaaactgagagtcagaaccagtttcacgtacaaacagaagttttgggagaaaacaagagaaagctaggag 34958664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 11662291 - 11662208
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  11662291 aggttggaaaaatagaaactgagagttagaaccagtttcacgtacaaacagaggttttgggagaaaacaagagaaagttaggag 11662208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13256879 - 13256795
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaa-caagagaaagctaggag 84  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  13256879 aggttggaaaaatagaaactaagagtcagaaccagtttcacgtacaaacagaggttttgggagaaaaccaagagaaagctaggag 13256795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 27944991 - 27945065
Alignment:
Q  206 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 280  Q
    |||||||| ||| |||||||||||||||||| |||||| ||||||| ||||||| | |||||||| |||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3288647 - 3288694
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaa 48  Q
    ||||||| |||||||||||||||||||| || |||||| |||||||||    
T  3288647 aggttgggaaaatagaaactgagagtcagaatcagttttacgtacaaa 3288694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 21518206 - 21518256
Alignment:
Q  35 gtttcacgtacaaacagagattttggg-agaaaacaagagaaagctaggag 84  Q
    |||| |||||||||||||  ||||||| |||||||||||||||||||||||    
T  21518206 gttttacgtacaaacagaagttttggggagaaaacaagagaaagctaggag 21518256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 40132069 - 40132024
Alignment:
Q  206 ctatgaagaacgaatacggacaccggacacggcacggatactgaca 251  Q
    |||||||| ||| ||| ||||||||||||||||||||| |||||||    
T  40132069 ctatgaagtacggatatggacaccggacacggcacggacactgaca 40132024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 23539951 - 23539868
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23539951 aggttggaaaaatagaaactaagagtcagaaccagtttcacgtacaaacagaggttttgggagaaaacaagagaaagctaggag 23539868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 38816818 - 38816728
Alignment:
Q  185 taattgaacggtaaccatatactatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatcg 282  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||       |||||||||||||| ||||||| |||||||||| |||||||||||    
T  38816818 taattgaacggtaaccatatactatgaagcactaatacggactccg-------cacggatactgacacgccgacaccgctaataatttgagaaaatcg 38816728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 19820503 - 19820428
Alignment:
Q  206 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||| ||| |||||||||||||||||| |||||| |||||||  |||||| |||||||||| ||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatc 19820428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 22013364 - 22013428
Alignment:
Q  206 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 270  Q
    |||||||| ||| |||||||||||||||||| |||||| ||||||| |||||||  |||||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataat 22013428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 21137654 - 21137713
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 280  Q
    |||||||||||||||  |||||| ||||||| ||||||| || ||||||| |||||||||    
T  21137654 acggacaccggacacaacacggacactgacacgccgacatcggtaataatctgagaaaat 21137713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 24276398 - 24276447
Alignment:
Q  36 tttcacgtacaaacagagattttgggagaaaa--caagagaaagctaggag 84  Q
    |||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  24276398 tttcacgtacaaacagag-ttttgggagaaaaaccaagagaaagctaggag 24276447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 24385815 - 24385766
Alignment:
Q  36 tttcacgtacaaacagagattttgggagaaaa--caagagaaagctaggag 84  Q
    |||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  24385815 tttcacgtacaaacagag-ttttgggagaaaaaccaagagaaagctaggag 24385766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 21979965 - 21980013
Alignment:
Q  33 cagtttcacgtacaaacagagattttgggagaaaa--caagagaaagcta 80  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||    
T  21979965 cagtttcacgtacaaacagag-ttttgggagaaaaaccaagagaaagcta 21980013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 21191147 - 21191090
Alignment:
Q  224 gacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    ||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  21191147 gacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatc 21191090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10833173 - 10833258
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagaga--ttttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  10833173 aggttggaaaaatagaaactgagagtcagaaccagtttcacgtacaaacagagaggttttgggagaaaacaagagaaagctaggag 10833258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10952597 - 10952680
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||    
T  10952597 aggttggaaaaatagaaactgagagtcagaaccagtttcacgtacaaatacaggttttgggagaaaacaagagaaagctaggag 10952680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 18893860 - 18893784
Alignment:
Q  8 aaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18893860 aaaaatagaaactgagagtcagaactagtttcacgtacaaacagaggttttgggagaaaacaagagaaagctaggag 18893784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10953526 - 10953609
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||| ||||||||||| ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  10953526 aggttgtaaaaatagaaattgagagtcagaaccagtttcacgtacaaacacaggttttgggagaaaacaagagaaagctaggag 10953609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 18898149 - 18898077
Alignment:
Q  12 atagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    ||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18898149 atagaaattgagagtcagaaacagtttcacgtacaaacagaggttttgggagaaaacaagagaaagctaggag 18898077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 8842280 - 8842344
Alignment:
Q  206 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 270  Q
    |||||||| ||| |||||||||||||| ||| |||||| | ||||| ||||||| ||||||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataat 8842344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 28917966 - 28918026
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatc 28918026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 24205135 - 24205076
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 280  Q
    |||||||||||||||| |||||| ||||||| |||||||  | ||||||| |||||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaat 24205076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 32429488 - 32429414
Alignment:
Q  207 tatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    ||||||| ||| |||||||||||||||||  |||| | | |||||  ||||||||||||||||| | ||||||||    
T  32429488 tatgaagcacgtatacggacaccggacacaacacgaacattgacactccgacaacgctaataatttaagaaaatc 32429414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 10335386 - 10335342
Alignment:
Q  215 acgaatacggacaccggacacggcacggatactgacaagccgaca 259  Q
    ||||| |||||||||||||||| |||||| ||||||| |||||||    
T  10335386 acgaacacggacaccggacacgacacggacactgacacgccgaca 10335342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0819 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0819
Description:

Target: scaffold0819; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 77 - 1
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaag 77  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  77 aggttggaaaaatagaaactgagagtcagaaccagtttcacgtacaaacagaggttttgggagaaaacaagagaaag 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 41300799 - 41300879
Alignment:
Q  4 ttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41300799 ttggaaaaatagaaactgagagtaagaaccagtttcacgtacaaacagaggttttgggagaaaacaagagaaagctaggag 41300879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 21072555 - 21072634
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagcta 80  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  21072555 aggttggaaaaatagaaactgagagtcagaaccagtttcacatacaaacagaggttttgggagaaaacaagagaaagcta 21072634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 33519736 - 33519800
Alignment:
Q  206 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 270  Q
    |||||||| ||| |||||||||||||||||| | ||||||||||||  |||||| ||||||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 33519800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 23003242 - 23003201
Alignment:
Q  35 gtttcacgtacaaacagagattttgggagaaaacaagagaaa 76  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  23003242 gtttcacgtacaaacagaaattttgggagaaagcaagagaaa 23003201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 4332891 - 4332951
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||||||||||||||| |||||| ||| |||||||  | ||||||| || |||||||    
T  4332891 acggacaccggacacggcacagatacttacatgccgacactgataataatttgggaaaatc 4332951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 18276486 - 18276546
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    ||||||||||||||||  || || ||||| | ||||||| |||||||||| ||||||||||    
T  18276486 acggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatc 18276546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 147807 - 147724
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||| ||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  147807 aggttggaaaaatagaaactaagagtcagagccagtttcacgtacaaacagaggttttgggagaaaacaagagaaagctaggag 147724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 29415423 - 29415506
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29415423 aggttggaaaaatagaaactaagtgtcagaaccagtttcacgtacaaacagaggttttgggagaaaacaagagaaagctaggag 29415506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 10294076 - 10294133
Alignment:
Q  225 acaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatcg 282  Q
    |||||||||||| |||||||||||||| ||||| | |||||||||| ||||| |||||    
T  10294076 acaccggacacgacacggatactgacatgccgataccgctaataatttgagataatcg 10294133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 5000720 - 5000660
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||||||||| | |||||||||||||| | ||||| ||||||||||  |||||||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatc 5000660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 853968 - 853893
Alignment:
Q  206 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||  ||| |||||||||||||||||| ||||||| |||||| |||||||   |||||||| ||| ||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatc 853893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 29847177 - 29847220
Alignment:
Q  33 cagtttcacgtacaaacagagattttgggagaaaacaagagaaa 76  Q
    ||||||||||||||||||||  |||||||||||| |||||||||    
T  29847177 cagtttcacgtacaaacagaagttttgggagaaagcaagagaaa 29847220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 30866253 - 30866178
Alignment:
Q  206 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||| |||||||||||||||||||| | ||| || || ||||  || ||| |||||||||| ||||||||||    
T  30866253 ctatgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatc 30866178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 8365628 - 8365575
Alignment:
Q  206 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgaca 259  Q
    |||||||| ||| ||||||||||| |||||| |||||| ||||||| |||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgaca 8365575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 1640121 - 1640061
Alignment:
Q  24 agtcaaaaccagtttcacgtacaaacagagattttgggagaaaa--caagagaaagctaggag 84  Q
    ||||| || |||||||||||||||| ||||  ||||||||||||  |||||||||||||||||    
T  1640121 agtcataagcagtttcacgtacaaatagag--tttgggagaaaaatcaagagaaagctaggag 1640061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 7938081 - 7938141
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||||||||||| || ||| ||||||| |||||||  ||||||||| ||| ||||||    
T  7938081 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatc 7938141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 9107464 - 9107404
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||||||||||| |||||| ||| ||| |||||||  ||||||||| ||| ||||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatc 9107404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 9184873 - 9184939
Alignment:
Q  8 aaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaa 76  Q
    ||||||||||||||  ||||| || || |||||||||| ||||||| |||||||||||| |||||||||    
T  9184873 aaaaatagaaactgttagtcagaagcattttcacgtac-aacagag-ttttgggagaaagcaagagaaa 9184939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 16766662 - 16766722
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||||||||||| || ||| ||||||| |||||||  ||||||||| ||| ||||||    
T  16766662 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatc 16766722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 391516 - 391433
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||| ||||||  ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  391516 aggttggaaaaatagaaactaagagtctgaaccagtttcacgtataaacagaggttttgggagaaaacaagagaaggctaggag 391433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 28313533 - 28313451
Alignment:
Q  1 aggttggaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||| ||||||    
T  28313533 aggttggaaaaatagaaactgagagtcagaaccagtttcacgtacaaaca-aggttttgggagaaaacaaaagaaagttaggag 28313451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 40917716 - 40917776
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||||||||||| |||||||||||||| |||||||  ||||||||| ||| ||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatc 40917776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 398858 - 398799
Alignment:
Q  222 cggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    ||||||||||||||| |||||| ||||||| ||||||| |||||||||| ||| ||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatc 398799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 6427323 - 6427375
Alignment:
Q  229 cggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    ||||||||||||||| ||||||| ||| ||| |||||||||| ||||||||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatc 6427375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 10572685 - 10572623
Alignment:
Q  219 atacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||||||||||||| || | | ||||||| ||||||| | |||||||| ||||||||||    
T  10572685 atacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatc 10572623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 20805454 - 20805425
Alignment:
Q  55 ttttgggagaaaacaagagaaagctaggag 84  Q
    ||||||||||||||||||||||||||||||    
T  20805454 ttttgggagaaaacaagagaaagctaggag 20805425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 18271473 - 18271423
Alignment:
Q  33 cagtttcacgtacaaacagagattttgggagaaaa--caagagaaagctaggag 84  Q
    |||||||||||||||||||   |||||||||||||  |||||||||||||||||    
T  18271473 cagtttcacgtacaaacag---ttttgggagaaaaaccaagagaaagctaggag 18271423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 18276127 - 18276077
Alignment:
Q  33 cagtttcacgtacaaacagagattttgggagaaaa--caagagaaagctaggag 84  Q
    |||||||||||||||||||   |||||||||||||  |||||||||||||||||    
T  18276127 cagtttcacgtacaaacag---ttttgggagaaaaaccaagagaaagctaggag 18276077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 48040558 - 48040518
Alignment:
Q  219 atacggacaccggacacggcacggatactgacaagccgaca 259  Q
    |||||||||||||||||| |||||| ||||||| |||||||    
T  48040558 atacggacaccggacacgacacggacactgacacgccgaca 48040518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 9802 - 9758
Alignment:
Q  40 acgtacaaacagagattttgggagaaaacaagagaaagctaggag 84  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  9802 acgtacaaacagaggttttgggagaaaacaagagaaatctaggag 9758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 385310 - 385260
Alignment:
Q  35 gtttcacgtacaaacagagattttggg-agaaaacaagagaaagctaggag 84  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||||||||    
T  385310 gttttacgtacaaacagaggttttggggagaaaacaagagaaagctaggag 385260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 13349 - 13425
Alignment:
Q  205 actatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    ||||||||| ||| |||||||||||||| | | |||||| ||||||| |||||||   |||||||| ||||||||||    
T  13349 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 13425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 21978 - 21902
Alignment:
Q  205 actatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    ||||||||| ||| |||||||||||||| | | |||||| ||||||| |||||||   |||||||| ||||||||||    
T  21978 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 21902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 8763 - 8823
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  8763 acggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 8823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 25192456 - 25192392
Alignment:
Q  206 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataat 270  Q
    |||||||| ||||||||||||| ||||||||  ||||| ||||||| |||||||  |||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataat 25192392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 926888 - 926822
Alignment:
Q  215 acgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    ||||| |||||||||||||||| |||||| ||||||| ||| |||   |||||||| ||||||||||    
T  926888 acgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatc 926822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 29510396 - 29510338
Alignment:
Q  223 ggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 29510338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 22651944 - 22652001
Alignment:
Q  224 gacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    ||||||||||||| |||||| ||||||| |||||||  ||||||||| ||| ||||||    
T  22651944 gacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 22652001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 24980264 - 24980223
Alignment:
Q  35 gtttcacgtacaaacagagattttgggagaaaacaagagaaa 76  Q
    ||||||||||||||||||  |||||||||||| |||||||||    
T  24980264 gtttcacgtacaaacagaagttttgggagaaagcaagagaaa 24980223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 19990050 - 19990018
Alignment:
Q  35 gtttcacgtacaaacagagattttgggagaaaa 67  Q
    ||||||||||||||||||| |||||||||||||    
T  19990050 gtttcacgtacaaacagagcttttgggagaaaa 19990018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 22815486 - 22815546
Alignment:
Q  24 agtcaaaaccagtttcacgtacaaacagagattttgggagaaaa--caagagaaagctaggag 84  Q
    ||||| || |||||||||||||||||  | ||||||||||||||  |||||||||||||||||    
T  22815486 agtcagaagcagtttcacgtacaaac--aaattttgggagaaaaaccaagagaaagctaggag 22815546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 3281 - 3340
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 280  Q
    |||||||||||||||| |||||||||||||| | |||||| ||||| ||| | |||||||    
T  3281 acggacaccggacacgacacggatactgacacgtcgacaatgctaacaattttagaaaat 3340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 20122 - 20197
Alignment:
Q  206 ctatgaagaacgaatacggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaatc 281  Q
    |||||||| ||  |||||||||||||||||| |||||| | ||||| |||||||  ||||||||| ||| ||||||    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 20197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 27439 - 27396
Alignment:
Q  24 agtcaaaaccagtttcacgtacaaacagagattttgggagaaaa 67  Q
    ||||| || ||||||||||||||||||||| |||||||||||||    
T  27439 agtcagaagcagtttcacgtacaaacagagcttttgggagaaaa 27396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 225362 - 225303
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataatatgagaaaat 280  Q
    |||||||||||||||| |||||| ||||||| |||||||  | ||||||| |||||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaat 225303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 2271 - 2223
Alignment:
Q  33 cagtttcacgtacaaacagagattttgggagaaaa--caagagaaagcta 80  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||    
T  2271 cagtttcacgtacaaacagag-ttttgggagaaaaaccaagagaaagcta 2223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 35334 - 35388
Alignment:
Q  30 aaccagtttcacgtacaaacagagattttgggagaaaa--caagagaaagctaggag 84  Q
    ||||||||||||||||||||  || |||||||||||||  |||||||||||||||||    
T  35334 aaccagtttcacgtacaaac--agcttttgggagaaaaaccaagagaaagctaggag 35388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 241559 - 241608
Alignment:
Q  221 acggacaccggacacggcacggatactgacaagccgacaacgctaataat 270  Q
    |||||||||||||||| |||||| ||||||| |||||||  |||||||||    
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataat 241608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 2778 - 2810
Alignment:
Q  35 gtttcacgtacaaacagagattttgggagaaaa 67  Q
    ||||||||||||||||||| |||||||||||||    
T  2778 gtttcacgtacaaacagagtttttgggagaaaa 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 25393 - 25467
Alignment:
Q  7 gaaaaatagaaactgagagtcaaaaccagtttcacgtacaaacagagattttgggagaaaa--caagagaaagcta 80  Q
    ||||| ||||| || ||| ||| || ||||||||||||| ||||||| |||||||||||||  |||||||||||||    
T  25393 gaaaattagaacctaagaatcagaagcagtttcacgtaccaacagag-ttttgggagaaaaaccaagagaaagcta 25467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 40122 - 40168
Alignment:
Q  35 gtttcacgtacaaacagagattttgggagaaaa--caagagaaagcta 80  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||    
T  40122 gtttcacgtacaaacagag-ttttgggagaaaaaccaagagaaagcta 40168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 515 times since January 2019
Visitors: 4385