View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0709_low_8 (Length: 268)
Name: NF0709_low_8
Description: NF0709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0709_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 41 - 237
Target Start/End: Original strand, 32183229 - 32183421
Alignment:
| Q |
41 |
caaatattagtagttagttgttagattagnnnnnnnncttctttatccaggtttgaacgttgtgatcaatttcacatagataattaatctacaatggcta |
140 |
Q |
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| T |
32183229 |
caaatattagtagttagttgttagattagttttttttcttctttatccgggtttgaacgttgtgatcaatttcacatagataat----ctacaatagcta |
32183324 |
T |
|
| Q |
141 |
aagaaagttgttcctttgcaggaactaagtggaagtaaattgcaagctgattcaaattctataccactagttttccatgaggtacacatcttccctt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183325 |
aagaaagttgttcctttgcaggaactaagtggaagtaaattgcaagctgattcaaattctataccactagttttccatgaggtacacatcttccctt |
32183421 |
T |
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