View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0710_high_3 (Length: 589)
Name: NF0710_high_3
Description: NF0710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0710_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 30 - 579
Target Start/End: Original strand, 45632727 - 45633283
Alignment:
| Q |
30 |
atatctttgattcaagactctacatctcagtctaataaatatgttgagactacatatagtatcaaagagcttatgtctagagacagagttgtttcattag |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45632727 |
atatctttgattcaagactcaacatctcagcctaataaatatgttgagactacatatagtatcaaagagcttatgtctagaaacagagttgtttcattag |
45632826 |
T |
|
| Q |
130 |
tccatatttatagagaagacaatgtgcagactacatggcgaaagtgag----agtaaacagcttggatcttttaagaatattttcagagccactaccttg |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
45632827 |
tccatatttatagagaagacaatgtgcagactacatggcaaaagtacgtggaaggaaacagcttggatcttttaagaatatttttagagccactaccttg |
45632926 |
T |
|
| Q |
226 |
cttatcttcattacttttgtttatattagtctataaatatgtagaccatataattttagtccttgaaatataaatcatacaaggactactatgaacatga |
325 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45632927 |
cttatcttctttacttttgtttatattagtctataaatatttagaccatataattttagtccttgaaatataaatcatacaaggactactattaacatga |
45633026 |
T |
|
| Q |
326 |
tcaacgtggttgaccttcaacaacctactctaacataaattaatgttttagacaaaaaagtgtatatgcatgcatatt---cggcttatttcacatcaaa |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||| |
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|
| T |
45633027 |
tcaacgtggttgaccttcaacaacctactctaacataaattaatgttttagataaaaaagtgtatatacatgcatattcaacggcttacttcacatcaaa |
45633126 |
T |
|
| Q |
423 |
tttctataaattattcgttatatattggccataaaatgcttaattacctgtctaaagcttcgaagtatctttgttttctcaattcaaagtatattttaat |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45633127 |
tttctataaattattcgttatatattggccataaaatgcttaattacctgtctaaagcctcgaagtatctttgttttctcaattcaaagtatattttaat |
45633226 |
T |
|
| Q |
523 |
tgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatc |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45633227 |
tgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatc |
45633283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 45632333 - 45632381
Alignment:
| Q |
250 |
attagtctataaatatgtagaccatataattttagtccttgaaatataa |
298 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45632333 |
attattctataaatatgtagaccatataattttagtccttgaaatataa |
45632381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 34034724 - 34034800
Alignment:
| Q |
36 |
ttgattcaagactctacatctcagtctaataaatatgttgagactacatatagtatcaaagagcttatgtctagaga |
112 |
Q |
| |
|
|||| ||||||||| ||||||||| || ||||||||||||||| ||| | |||||||| |||||| |||||||||| |
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|
| T |
34034724 |
ttgagtcaagactcaacatctcagcctcataaatatgttgagattacggagagtatcaaggagcttgtgtctagaga |
34034800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 30 - 579
Target Start/End: Complemental strand, 2658526 - 2657970
Alignment:
| Q |
30 |
atatctttgattcaagactctacatctcagtctaataaatatgttgagactacatatagtatcaaagagcttatgtctagagacagagttgtttcattag |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2658526 |
atatctttgattcaagactcaacatctcagcctaataaatatgttgagactacatatagtatcaaagagcttatgtctagaaacagagttgtttcattag |
2658427 |
T |
|
| Q |
130 |
tccatatttatagagaagacaatgtgcagactacatggcgaaagtgag----agtaaacagcttggatcttttaagaatattttcagagccactaccttg |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2658426 |
tccatatttatagagaagacaatgtgcagactacatggcaaaagtacgtggaaggaaacagcttggatcttttaagaatatttttagagccactaccttg |
2658327 |
T |
|
| Q |
226 |
cttatcttcattacttttgtttatattagtctataaatatgtagaccatataattttagtccttgaaatataaatcatacaaggactactatgaacatga |
325 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2658326 |
cttatcttctttacttttgtttatattagtctataaatatttagaccatataattttagtccttgaaatataaatcatacaaggactactattaacatga |
2658227 |
T |
|
| Q |
326 |
tcaacgtggttgaccttcaacaacctactctaacataaattaatgttttagacaaaaaagtgtatatgcatgcatatt---cggcttatttcacatcaaa |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||| |
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|
| T |
2658226 |
tcaacgtggttgaccttcaacaacctactctaacataaattaatgttttagataaaaaagtgtatatacatgcatattcaacggcttacttcacatcaaa |
2658127 |
T |
|
| Q |
423 |
tttctataaattattcgttatatattggccataaaatgcttaattacctgtctaaagcttcgaagtatctttgttttctcaattcaaagtatattttaat |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2658126 |
tttctataaattattcgttatatattggccataaaatgcttaattacctgtctaaagcctcgaagtatctttgttttctcaattcaaagtatattttaat |
2658027 |
T |
|
| Q |
523 |
tgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatc |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2658026 |
tgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatc |
2657970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 2658920 - 2658872
Alignment:
| Q |
250 |
attagtctataaatatgtagaccatataattttagtccttgaaatataa |
298 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2658920 |
attattctataaatatgtagaccatataattttagtccttgaaatataa |
2658872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 579
Target Start/End: Original strand, 5879221 - 5879358
Alignment:
| Q |
442 |
atatattggccataaaatgcttaattacctgtctaaagcttcgaagtatctttgttttctcaattcaaagtatattttaattgaatgattattgtcttca |
541 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| || || || | ||| |||| ||||| | ||||||| ||||||| | || ||| ||||||||| |
|
|
| T |
5879221 |
atatattgagcataaaattcttaactacctgtccaatgcctcaagatatttttgctttctaagttcaaagaatattttggtggagtgaccgttgtcttca |
5879320 |
T |
|
| Q |
542 |
acttttgtaaatccagaaagatatttctcaacttcatc |
579 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
5879321 |
acttttgtgaatccagttagatatttctcagcttcatc |
5879358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 579
Target Start/End: Original strand, 5875426 - 5875469
Alignment:
| Q |
536 |
tcttcaacttttgtaaatccagaaagatatttctcaacttcatc |
579 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
5875426 |
tcttcaacttttgtgaatccagatagatatttctcagcttcatc |
5875469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 34888875 - 34888953
Alignment:
| Q |
35 |
tttgattcaagactctacatctcagtctaataaatatgttgagactacatatagtatcaaagagcttatgtctagagac |
113 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||||||| | | |||||||||| ||| |||||||||||||| |
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|
| T |
34888875 |
tttgattcaagactcaacatctcaatctcataaatatgttgagataaaagatagtatcaaggaggttatgtctagagac |
34888953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 584
Target Start/End: Original strand, 20444553 - 20444645
Alignment:
| Q |
492 |
tttgttttctcaattcaaagtatattttaattgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatctcact |
584 |
Q |
| |
|
|||||||||| | ||||| |||||||| ||||| |||| ||||||||||||||||| ||||| || |||||||||||| |||||| |||| |
|
|
| T |
20444553 |
tttgttttctaagctcaaaatatattttgattgagtgatcgttgtcttcaacttttgtgaatcctgatagatatttctcagtttcatcccact |
20444645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 584
Target Start/End: Original strand, 20409444 - 20409536
Alignment:
| Q |
492 |
tttgttttctcaattcaaagtatattttaattgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatctcact |
584 |
Q |
| |
|
|||||||||| | ||||| |||||||| ||||| |||| |||||||||||||||| ||||| || ||||| |||||| ||||||| |||| |
|
|
| T |
20409444 |
tttgttttctaagctcaaaatatattttgattgagtgatcgctgtcttcaacttttgtgaatcctgatagatacttctcagcttcatcccact |
20409536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 584
Target Start/End: Complemental strand, 20444497 - 20444419
Alignment:
| Q |
506 |
tcaaagtatattttaattgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatctcact |
584 |
Q |
| |
|
||||| |||||||| ||| | |||| ||||||||||||||||| ||||| || ||||| |||||| ||||||| |||| |
|
|
| T |
20444497 |
tcaaaatatattttgatttagtgatcgttgtcttcaacttttgtgaatcctgatagatagttctcagcttcatcccact |
20444419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 584
Target Start/End: Original strand, 20424852 - 20424944
Alignment:
| Q |
492 |
tttgttttctcaattcaaagtatattttaattgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatctcact |
584 |
Q |
| |
|
|||||||||| | ||||| |||||||| | | | |||| ||||||||||||||||| ||||| || |||||||| ||| ||||||| |||| |
|
|
| T |
20424852 |
tttgttttctaagctcaaaatatattttgactaagtgatcgttgtcttcaacttttgtgaatcctgatagatatttatcagcttcatcccact |
20424944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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