View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0710_low_13 (Length: 327)

Name: NF0710_low_13
Description: NF0710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0710_low_13
NF0710_low_13
[»] chr8 (2 HSPs)
chr8 (16-299)||(42079062-42079345)
chr8 (107-293)||(23519737-23519923)
[»] chr1 (4 HSPs)
chr1 (107-292)||(41489191-41489376)
chr1 (108-293)||(29806752-29806937)
chr1 (103-252)||(45434323-45434471)
chr1 (119-260)||(16477224-16477364)
[»] chr7 (2 HSPs)
chr7 (104-277)||(20187432-20187605)
chr7 (119-261)||(6739032-6739172)
[»] chr3 (2 HSPs)
chr3 (107-294)||(14166978-14167164)
chr3 (189-251)||(55255570-55255632)
[»] chr4 (2 HSPs)
chr4 (103-225)||(19126448-19126569)
chr4 (103-252)||(14166128-14166276)
[»] scaffold0013 (1 HSPs)
scaffold0013 (16-105)||(42879-42968)
[»] chr6 (1 HSPs)
chr6 (16-91)||(17393245-17393320)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 42079345 - 42079062
Alignment:
Q  16 atgagctcctggaatattaccgtcaatacgctcaccattatttagccaaggttcatcaagaataggaatacgagtaccaaaaccaatacttcgttacttg 115  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42079345 atgagctcctagaatattaccgtcaatacgctcaccattatttagccaaggttcatcaagaataggaatacgagtaccaaaaccaatacttcgttacttg 42079246  T
Q  116 ttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattgaatgtcaag 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42079245 ttaggtattgaggtagcccaatccaaggatggtattgtaatttcac-aaaagaaatatgctatgaatattatagaagaaacatgtctattgaatgtcaag 42079147  T
Q  216 ccaattgatattcacatggatccaaatgtcaaacttcaacctaataaa-gggagcctctatcatattcaataagatataataatt 299  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  42079146 ccaattgatattcacatggatccaaatgtcagacttcaacctaataaaggggagcctctatcagattcaataagatataagaatt 42079062  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 107 - 293
Target Start/End: Original strand, 23519737 - 23519923
Alignment:
Q  107 cgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattg 206  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||| | ||||||||  ||||||||    
T  23519737 cgttactttttgggtattgaggtagcccaatccaaggatggtattgtaatttcac-aaaggaaatacgctatggatattcttgaagaaactggtctattg 23519835  T
Q  207 aatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaac-ctaataaagggagcctctatcatattcaataagatata 293  Q
    | |  ||||||| |||||| ||  ||||||||||||||||| |||| ||   ||||   |||||||||||||||||||  ||||||||    
T  23519836 atttccaagccagttgatactcctatggatccaaatgtcaagcttctacaaaaataggaggagcctctatcatattcaggaagatata 23519923  T

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Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 107 - 292
Target Start/End: Complemental strand, 41489376 - 41489191
Alignment:
Q  107 cgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattg 206  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||  |||||||||| || ||||| | ||||||||| ||||||||    
T  41489376 cgttactttttgggtattgatgtagcccaatccaaggatggtattgtaatttcacaaag-gaaatatgctttggatattcttgaagaaacaggtctattg 41489278  T
Q  207 aatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaat-aaagggagcctctatcatattcaataagatat 292  Q
    |||| |||||| ||||||| ||  |||||||||||||||||||||| ||||||| || |||||||| ||||| |||||  |||||||    
T  41489277 aatgccaagccgattgatactccgatggatccaaatgtcaaacttctacctaatcaaggggagcctttatcagattcaggaagatat 41489191  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 108 - 293
Target Start/End: Complemental strand, 29806937 - 29806752
Alignment:
Q  108 gttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattga 207  Q
    ||||||| || ||||| |||||||||||||||| |||||||||| | ||||||||||  |||||||||||||||||||   |||||||||||||||||||    
T  29806937 gttactttttgggtatcgaggtagcccaatccatggatggtattatgatttcacaaag-gaaatatgctatgaatattcatgaagaaacatgtctattga 29806839  T
Q  208 atgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaataaag-ggagcctctatcatattcaataagatata 293  Q
    ||| ||| ||| |||||| ||  |||||||||||||||||| ||| ||||||| | | ||||||||||||| |||||| ||||||||    
T  29806838 atgccaaaccagttgatactcctatggatccaaatgtcaaatttctacctaatcaggaggagcctctatcagattcaagaagatata 29806752  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 103 - 252
Target Start/End: Complemental strand, 45434471 - 45434323
Alignment:
Q  103 acttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtct 202  Q
    ||||||||| || || |||||||||||||||||||| ||||||||| | ||||| ||||||  | |||||||||||| ||||| | ||||||||||||||    
T  45434471 acttcgttattttttgggtattgaggtagcccaatctaaggatggtctagtaatatcacaacga-aaatatgctatggatattcttgaagaaacatgtct 45434373  T
Q  203 attgaatgtcaagccaattgatattcacatggatccaaatgtcaaacttc 252  Q
     ||||| | ||||||| |||||| ||  |||||||| |||||||||||||    
T  45434372 tttgaacgccaagccagttgatactcctatggatcctaatgtcaaacttc 45434323  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 260
Target Start/End: Complemental strand, 16477364 - 16477224
Alignment:
Q  119 ggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattgaatgtcaagcca 218  Q
    ||||||||||||| | ||||||| |||| |||||||||||||| ||| ||||| |  |||| ||||| | |||||||||| |  |||||||| |||||||    
T  16477364 ggtattgaggtagtctaatccaaagatgatattgtaatttcac-aaaggaaatgttgtatgtatattcttgaagaaacatataaattgaatgccaagcca 16477266  T
Q  219 attgatattcacatggatccaaatgtcaaacttcaacctaat 260  Q
    ||||||| |||   ||||  ||||||||| |||| |||||||    
T  16477265 attgatactcatgcggatgtaaatgtcaatcttctacctaat 16477224  T

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Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 104 - 277
Target Start/End: Complemental strand, 20187605 - 20187432
Alignment:
Q  104 cttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtcta 203  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||||||  |||| | |||| ||||||||||    
T  20187605 cttcgttactttctaggtattgaggtagcccaatccaaggatgatattgtaagttcac-aaaggaaatatgctatggttattcttgaagtaacatgtcta 20187507  T
Q  204 ttgaatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaa-taaagggagcctctatca 277  Q
    |||||||  ||| ||||||||| ||| ||| ||||||||||||||| || |||||| ||  ||||||||||||||    
T  20187506 ttgaatgctaagtcaattgatactcatatgaatccaaatgtcaaacgtctacctaattagggggagcctctatca 20187432  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 6739032 - 6739172
Alignment:
Q  119 ggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattgaatgtcaagcca 218  Q
    |||||||||||| |||||||||| |||||| || |||| | | | ||||||||||| |||  ||||| | ||||||||||||||||| ||||||||  ||    
T  6739032 ggtattgaggtaacccaatccaatgatggtcttctaatatga-agaaagaaatatgttatagatattcttgaagaaacatgtctatttaatgtcaa-aca 6739129  T
Q  219 attgatattcacatggatccaaatgtcaaacttcaacctaata 261  Q
     |||||| ||  ||  |||||||||||||| ||| ||||||||    
T  6739130 gttgatactcttataaatccaaatgtcaaaattctacctaata 6739172  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 107 - 294
Target Start/End: Complemental strand, 14167164 - 14166978
Alignment:
Q  107 cgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattg 206  Q
    |||||||| || | |||||||||| ||||||||| |||||||||||||||||||||||  ||||||||||||| ||||| | |||||||||||| |||||    
T  14167164 cgttactttttggatattgaggtaacccaatccatggatggtattgtaatttcacaaag-gaaatatgctatggatattcttgaagaaacatgtatattg 14167066  T
Q  207 aatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaataa-agggagcctctatcatattcaataagatataa 294  Q
    |||| ||||||| |||||| ||  |||||||||||||| |||  || |||||||||  |||||||||||||| |||||  |||||||||    
T  14167065 aatgccaagccagttgatactcctatggatccaaatgttaaa-atctacctaataagggggagcctctatcagattcaggaagatataa 14166978  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 55255570 - 55255632
Alignment:
Q  189 gaagaaacatgtctattgaatgtcaagccaattgatattcacatggatccaaatgtcaaactt 251  Q
    ||||||||| || ||||||||| ||||||| |||||| ||  ||||||| |||||||||||||    
T  55255570 gaagaaacaggtatattgaatgccaagccagttgatactcctatggatctaaatgtcaaactt 55255632  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 225
Target Start/End: Original strand, 19126448 - 19126569
Alignment:
Q  103 acttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtct 202  Q
    |||| ||||||| || ||||||||| |||| ||||||||||||||| ||||||||||||||   ||||||||||||||||||| | ||||||||||||||    
T  19126448 acttagttactttttgggtattgagatagctcaatccaaggatggtgttgtaatttcacaagg-gaaatatgctatgaatattcttgaagaaacatgtct 19126546  T
Q  203 attgaatgtcaagccaattgata 225  Q
    |||||||| ||||||||||||||    
T  19126547 attgaatgccaagccaattgata 19126569  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 252
Target Start/End: Complemental strand, 14166276 - 14166128
Alignment:
Q  103 acttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtct 202  Q
    ||||||||| || || |||||||||||||||||||| ||||||||| | ||||| ||||||  | |||||||||||| ||||| | ||||||||| ||||    
T  14166276 acttcgttattttttgggtattgaggtagcccaatctaaggatggtctagtaatatcacaacga-aaatatgctatggatattcttgaagaaacaggtct 14166178  T
Q  203 attgaatgtcaagccaattgatattcacatggatccaaatgtcaaacttc 252  Q
     ||||| | ||||||| |||||| ||  || | ||| |||||||||||||    
T  14166177 tttgaacgccaagccagttgatactcctattgttcctaatgtcaaacttc 14166128  T

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Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 42968 - 42879
Alignment:
Q  16 atgagctcctggaatattaccgtcaatacgctcaccattatttagccaaggttcatcaagaataggaatacgagtaccaaaaccaatact 105  Q
    |||||||| |||| |||||  |||||||||||||| | |||  | ||||||||||||||| |||||||||| ||||||| | ||||||||    
T  42968 atgagctcatggagtattattgtcaatacgctcactagtatgcaaccaaggttcatcaaggataggaatacaagtaccagacccaatact 42879  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 17393245 - 17393320
Alignment:
Q  16 atgagctcctggaatattaccgtcaatacgctcaccattatttagccaaggttcatcaagaataggaatacgagta 91  Q
    ||||||||||| |||||||  |||||||| |||||||||||  | | ||||||||||||| |||||||||| ||||    
T  17393245 atgagctcctgaaatattattgtcaatacactcaccattatgcaacgaaggttcatcaaggataggaatacaagta 17393320  T

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