View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0710_low_16 (Length: 304)
Name: NF0710_low_16
Description: NF0710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0710_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 146 - 289
Target Start/End: Original strand, 3732842 - 3732995
Alignment:
| Q |
146 |
aggcacatatatgatttgatatatgttaattacgtcaaacaaatagtaaagcatattatactaatgtatgtatatataagg-tcaagttttattt----- |
239 |
Q |
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| T |
3732842 |
aggcacatatatgatttgatatatgttaattacgtcaaacaaatagtaaagcatattatattaatgtatgtatatataaggttaaagttttttttttttt |
3732941 |
T |
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| Q |
240 |
----atgtgcgactctttcaacattatttaattcaataatgttcaacaactcag |
289 |
Q |
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| T |
3732942 |
tttattgtgcgactctttcaacattatttaatttaataatgttcaacaactcag |
3732995 |
T |
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Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 51186717 - 51186813
Alignment:
| Q |
34 |
tttcatgaaaatccagaagctttgtttcttagcttttaggataccgtgatt-cttgccgcaagtttgataaataaaacgccactccaaacacactat |
129 |
Q |
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| T |
51186717 |
tttcatgaaaatccagaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgccactccaaacacactat |
51186813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 41739730 - 41739638
Alignment:
| Q |
34 |
tttcatgaaaatccagaagctttgtttcttagcttttaggataccgtgattc-ttgccgcaagtttgataaataaaacgccactccaaacaca |
125 |
Q |
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| T |
41739730 |
tttcgtgaaaatttagaagctttgtatcatagcttttagaatactgtgattccttgccgcacgtgtgataaataaaacgtcactccaaacaca |
41739638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 3732797 - 3732830
Alignment:
| Q |
129 |
taattcatgcttcatataggcacatatatgattt |
162 |
Q |
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| T |
3732797 |
taattcatgcttcatataggcacatatatgattt |
3732830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 12525140 - 12525227
Alignment:
| Q |
39 |
tgaaaatccagaagctttgtttcttagcttttaggataccgtga-ttcttgccgcaagtttgataaataaaacgccactccaaacaca |
125 |
Q |
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||||||| ||||| |||||||||||| ||||||||||||| | | ||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
12525140 |
tgaaaattcagaaactttgtttcttaacttttaggataccttaatttcttaccgcacgtttgataaataaaacgccgttccaaacaca |
12525227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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