View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0710_low_2 (Length: 833)

Name: NF0710_low_2
Description: NF0710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0710_low_2
NF0710_low_2
[»] chr1 (1 HSPs)
chr1 (35-740)||(8293547-8294257)


Alignment Details
Target: chr1 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 35 - 740
Target Start/End: Original strand, 8293547 - 8294257
Alignment:
Q  35 gaacctgtggagctgcttacaattgattgaaactggtaaatcttatgtgtccatttattttt-ctcttctcttccgtgttaatttctctgattccagata 133  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8293547 gaacctgtggagctgcttacaattgactgaaactggtaaatcttatgtgtccatttattttttctcttctcttccgtgttaatttctctgattccagata 8293646  T
Q  134 ttttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggtttaggtgctannnnnnnaataacaaat 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  8293647 ttttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggtttaggtgctatttttttaataacaaat 8293746  T
Q  234 gtagaatattagtatgttaatagttaggttagtattgttttctctcgtgacgattaaattgattatcagtttctgcaatgtacacgtttctgttgttttt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8293747 gtagaatattagtatgttaatagttaggttagtattgttttctctcgtgacgattaaattgattatcagtttctgcaatgtacacgtttctgttgttttt 8293846  T
Q  334 atatagttatgagttactgctattagttttatgtgtgtaatatgaatatcccttccacatcatattggagctctgatcagtgatgatgttatttttcgag 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||      
T  8293847 atatagttatgagttactgctattagttttatgtgtgtaatatgaatatcccttccacatcatattggagctctgatcagtgacgatgttattttccgca 8293946  T
Q  434 ctttctccgtcttagtcttctgagcagtatttttattactaatatttgcaagggacaagtattctgcagtggttcagtg-nnnnnnntaaatacaagtat 532  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  8293947 ctttcttcgtcatagtcttctgagcagtatttttattactaatatttgcaagggacaagtattctgcagtggttcagtgaaaaaaaataaatacaagtat 8294046  T
Q  533 actagttggaattcc---nnnnnnnnatatagtgatgtcaagatactttagtgatccttttacatcataatcaaaagaaacttatacttattttaataca 629  Q
    |||||||||||||||           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8294047 actagttggaattcctttttttttttatatagtgatgtcaagacactttagtgatccttttacatcaaaatcaaaagaaacttatacttattttaataca 8294146  T
Q  630 ctagtgtttgcaacttgcaatgattctgcagtggctcgttgaaatgaaaacggatgagatggnnnnnnncaacacattgataaatctacctgttgatgtg 729  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  8294147 ctaatgtttgcaacttgcaatgattctgcagtggctcgttgaaatgaaaacggatgagatggaaaaaaacaacacattgataaatctacctgttgatgtg 8294246  T
Q  730 ttggaattgat 740  Q
    |||||||||||    
T  8294247 ttggaattgat 8294257  T

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