View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0710_low_5 (Length: 524)
Name: NF0710_low_5
Description: NF0710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0710_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 174 - 514
Target Start/End: Complemental strand, 39848589 - 39848249
Alignment:
| Q |
174 |
tgatatgtaggaaaatgttgctaaagagtttggcataccagctcaattcccgcgcttttggttatgggaaaagcgtgaaaaccatacatgtcgaccatct |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848589 |
tgatatgtaggaaaatgttgctaaagagtttggcataccagctcaattccagcgcttttggttatgggaaaagcgtgaaaaccatacatgtcgaccatct |
39848490 |
T |
|
| Q |
274 |
cggcttttgacacacatcgatgaagcacaatctgtaaattcacaaaattgcttgaaacttttcaatattgttttgctcatatagccgctttaagcatcat |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848489 |
cggcttttgacacacatcgatgaagcacaatctgtaaattcacaaaattgcttgaaacttttcaatattgttttgctcatatagccgctttaagcatcat |
39848390 |
T |
|
| Q |
374 |
aatttatgactttttcatctctgattgttgcttatatatctgctttaagcttcataatttatgacttttacccctcatttatgttacatgttgaatctgc |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848389 |
aatttatgactttttcatctctgattgttgcttatatatctgctttaagcttcataatttatgacttttacccctcatttatgttacatgttgaatctgc |
39848290 |
T |
|
| Q |
474 |
tcatgtcatttatatcaagctgatacttagttctatctgtg |
514 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39848289 |
tcatgtcatttatatcaagctgatacttagttcaatctgtg |
39848249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 190 - 403
Target Start/End: Complemental strand, 39858327 - 39858114
Alignment:
| Q |
190 |
gttgctaaagagtttggcataccagctcaattcccgcgcttttggttatgggaaaagcgtgaaaaccatacatgtcgaccatctcggcttttgacacaca |
289 |
Q |
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||||||| |||||||||||||| ||||||||||| |||||||||| | ||| ||||||||| |||| ||||| |||||||| ||||| ||||||| ||| |
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| T |
39858327 |
gttgctagagagtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacataca |
39858228 |
T |
|
| Q |
290 |
tcgatgaagcacaatctgtaaattcacaaaattgcttgaaacttttcaatattgttttgctcatatagccgctttaagcatcataatttatgactttttc |
389 |
Q |
| |
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|||| |||||| ||||||||| |||| | |||||||||| ||||||||||||||||||||||||| || ||| |||| ||||| |||||||||||||| |
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| T |
39858227 |
tcgaggaagcaaaatctgtaagttcatgagattgcttgaagtttttcaatattgttttgctcatatatccccttcaagcttcatattttatgactttttc |
39858128 |
T |
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| Q |
390 |
atctctgattgttg |
403 |
Q |
| |
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||||||| |||||| |
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| T |
39858127 |
atctctggttgttg |
39858114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 39848734 - 39848630
Alignment:
| Q |
29 |
aagaagaacaacatacgtcacacgaatcttgtggtttttatgcatttgttttgtaatttatattataacttatgaattatgtgatgattattgcacccat |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848734 |
aagaagaacaacatacgtcacacgaatcttgtggtttttatgcatttgttttgtaatttatattataacttatgaattatgtgatgattattgcacccat |
39848635 |
T |
|
| Q |
129 |
ctgtt |
133 |
Q |
| |
|
||||| |
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|
| T |
39848634 |
ctgtt |
39848630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 201 - 315
Target Start/End: Complemental strand, 39899185 - 39899071
Alignment:
| Q |
201 |
gtttggcataccagctcaattcccgcgcttttggttatgggaaaagcgtgaaaaccatacatgtcgaccatctcggcttttgacacacatcgatgaagca |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||| || |||||| |
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| T |
39899185 |
gtttggcataccagctcaattccagcgcttttggttatgggaaaagcgtcaaaaccatacatgtcgaccttctcggcctttgacaaacattgaggaagca |
39899086 |
T |
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| Q |
301 |
caatctgtaaattca |
315 |
Q |
| |
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| T |
39899085 |
ggacctgtaaattca |
39899071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 174 - 356
Target Start/End: Complemental strand, 39865666 - 39865484
Alignment:
| Q |
174 |
tgatatgtaggaaaatgttgctaaagagtttggcataccagctcaattcccgcgcttttggttatgggaaaagcgtgaaaaccatacatgtcgaccatct |
273 |
Q |
| |
|
||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||||||| ||| | ||||||||||||| |||||||||| |||| | |
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| T |
39865666 |
tgatatgtaggaagaggttgctaaagagttttgcataccagctcaattccagcgcttttgggtatttgcaaagcgtgaaaacgatacatgtcgtccattt |
39865567 |
T |
|
| Q |
274 |
cggcttttgacacacatcgatgaagcacaatctgtaaattcacaaaattgcttgaaacttttcaatattgttttgctcatata |
356 |
Q |
| |
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|| | ||||||| ||| || |||||| | ||||||||||| || || |||||| ||| |||||||| ||||||| ||||| |
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| T |
39865566 |
cgtccgttgacacgcattgaggaagcaggacctgtaaattcataagatctcttgaagcttatcaatattattttgctgatata |
39865484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 310
Target Start/End: Complemental strand, 37467094 - 37466958
Alignment:
| Q |
174 |
tgatatgtaggaaaatgttgctaaagagtttggcataccagctcaattcccgcgcttttggttatgggaaaagcgtgaaaaccatacatgtcgaccatct |
273 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||||||| | |||||||| |||||||||| |||||| ||||||| |||||||||||| ||| || | |
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| T |
37467094 |
tgatatgtaggaagaggttgctaaagagttcggcatacctgttcaattccagcgcttttggctatgggcaaagcgtcaaaaccatacatatcgtcctaat |
37466995 |
T |
|
| Q |
274 |
cggcttttgacacacatcgatgaagcacaatctgtaa |
310 |
Q |
| |
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|| | |||||||| || || |||||||||||||||| |
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| T |
37466994 |
cgtccattgacacaaattgaggaagcacaatctgtaa |
37466958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 39858430 - 39858344
Alignment:
| Q |
29 |
aagaagaacaacatacgtcacacgaatcttgtggtttttatgcattt-gttttgtaatttatattataacttatgaattatgtgatg |
114 |
Q |
| |
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|||||||| ||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| ||||||| |
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| T |
39858430 |
aagaagaaaaacatacgtcatatgaatcttgtggtttttatgcttttggttttgtaatttatattataacttaagaattttgtgatg |
39858344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 174 - 313
Target Start/End: Complemental strand, 39912246 - 39912107
Alignment:
| Q |
174 |
tgatatgtaggaaaatgttgctaaagagtttggcataccagctcaattcccgcgcttttggttatgggaaaagcgtgaaaaccatacatgtcgaccatct |
273 |
Q |
| |
|
||||||||||||| | ||||| |||||||| |||||||| |||| ||||| |||||||||| |||||| ||||||| ||||||||||| ||| |||| | |
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| T |
39912246 |
tgatatgtaggaagaggttgccaaagagttcggcataccggctcgattccagcgcttttggctatgggcaaagcgtctaaaccatacatatcgtccattt |
39912147 |
T |
|
| Q |
274 |
cggcttttgacacacatcgatgaagcacaatctgtaaatt |
313 |
Q |
| |
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|||| |||||| |||| || |||||| | ||||||||| |
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|
| T |
39912146 |
cggccattgacatacattgaggaagcagcacctgtaaatt |
39912107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 38967961 - 38968028
Alignment:
| Q |
177 |
tatgtaggaaaatgttgctaaagagtttggcataccagctcaattcccgcgcttttggttatgggaaa |
244 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |
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|
| T |
38967961 |
tatgtaggaagaggttgctaaagagtttggcataccagctcaattccagcgcttttagctatgggaaa |
38968028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 39858110 - 39858059
Alignment:
| Q |
451 |
tttatgttacatgttgaatctgctcatgtcatttatatcaagctgatactta |
502 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
39858110 |
tttatgtttaatgttgaatctgctcatgacatctatatcaagctgatactta |
39858059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 36058350 - 36058420
Alignment:
| Q |
190 |
gttgctaaagagtttggcataccagctcaattcccgcgcttttggttatgggaaaagcgtgaaaaccatac |
260 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||| | |||||||||| | |||| |||||| |||||||||| |
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|
| T |
36058350 |
gttgcaaaagagtttggtataccagttcaatttcagcgcttttggctgtgggctaagcgtcaaaaccatac |
36058420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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