View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0710_low_6 (Length: 523)
Name: NF0710_low_6
Description: NF0710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0710_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 123 - 523
Target Start/End: Complemental strand, 39290414 - 39290014
Alignment:
| Q |
123 |
taagtttctactataggtaaacaaaagtaacttaataaatttttacagtgtttcaagcaaacagagaaggagtaacaaattacttgccttaaaattttgt |
222 |
Q |
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| T |
39290414 |
taagtttctactataggtaaacaaaagtaactaaataaatttttacagtgtttcaagcaaacagagaaggagtaacaaattacttgccttaaaattttgt |
39290315 |
T |
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| Q |
223 |
gtaattttgagccattcaagagtcccaaattggaccaaatgcaggaatcttagccttgttacaagctctaacaacatctctactaccttcaggattactt |
322 |
Q |
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| T |
39290314 |
gtaattttgagccattcaagagtcccaaattggaccaaatgcaggaatcttagccttgttacaagctctaacaacatctctactaccttcaggattactt |
39290215 |
T |
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| Q |
323 |
gtaacaataacaacttcaacattccaattaatagcagcattcacactcatctcagccacattaggacgaccagaaacaacagtatcatgaacaataattt |
422 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
39290214 |
gtgacaataacaacttcaacattccaattaatagcagcattcacactcatctcagccacattaggacgaccagaaacagcagtatcatgaacaatgattt |
39290115 |
T |
|
| Q |
423 |
tgtccttgggatatttctctaccatttcctttatctcatttccaaagttcagttcaatatctttagccacccaaatcaaatacacatcagccttactttt |
522 |
Q |
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|||||| || ||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
39290114 |
tgtcctcggaatatttctccaccaattcctttatctcttttccaaagttcatttcaatatctttagccacccaaatcaagcacacatcagccttattttt |
39290015 |
T |
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| Q |
523 |
c |
523 |
Q |
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| T |
39290014 |
c |
39290014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 193 - 523
Target Start/End: Complemental strand, 39297221 - 39296894
Alignment:
| Q |
193 |
agtaacaaattacttgccttaaaattttgtgtaattttgagccattcaagagtcccaaattggaccaaatgcaggaatcttagccttgttacaagctcta |
292 |
Q |
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| T |
39297221 |
agtaacaaattacttgccttacaagtttttgt---ttagaacctttcaagagtcccaaattggaccaaaagcaggaattttagccttgttacaagctcta |
39297125 |
T |
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| Q |
293 |
acaacatctctactaccttcaggattacttgtaacaataacaacttcaacattccaattaatagcagcattcacactcatctcagccacattaggacgac |
392 |
Q |
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| T |
39297124 |
acaacatctctactaccttcaggattacttgtaacaataacaacttcaacattccaattattagcagcattcacactcatctcagccacattaggacgac |
39297025 |
T |
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| Q |
393 |
cagaaacaacagtatcatgaacaataattttgtccttgggatatttctctaccatttcctttatctcatttccaaagttcagttcaatatctttagccac |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39297024 |
cagaaacaacagtatcatgaacaataattttgtccttgggatatttctctaccatttcctttatctcatttccaaagttcagttcaatatctttagccac |
39296925 |
T |
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| Q |
493 |
ccaaatcaaatacacatcagccttacttttc |
523 |
Q |
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| T |
39296924 |
ccaaatcaaatacacatcagccttacttttc |
39296894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 8294257 - 8294191
Alignment:
| Q |
3 |
atcaattccaacacatcaacaggtagatttatcaatgtgttgnnnnnnnccatctcatccgttttca |
69 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8294257 |
atcaattccaacacatcaacaggtagatttatcaatgtgttgtttttttccatctcatccgttttca |
8294191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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