View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0710_low_7 (Length: 502)
Name: NF0710_low_7
Description: NF0710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0710_low_7 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 30 - 445
Target Start/End: Original strand, 38477238 - 38477648
Alignment:
| Q |
30 |
gttgccaaactaagaatctgccatgcatggaatactatgtttttctaagcttcgagtttcctttatcaccgtgctgcatcgagctgttcaccttttgcag |
129 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38477238 |
gttgccaaactaagaatctgccgtgcatggaatactatgtttttctaagcttcgagtttcctttatcaccgtgctgcatcgagctgttcaccttttgcag |
38477337 |
T |
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| Q |
130 |
tgaccatgtacgcttatcccgtagacaattttctgtgtttatttttctgagttgctcatgtagataaacatgcctgtacaaattttagagacaaataaga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38477338 |
cgaccatgtacgcttatcccgtagacaattttctgtgtttatttttctgtgttgctcatgtagataaacatgcctgtacaaattttagagacaaataaga |
38477437 |
T |
|
| Q |
230 |
gctagttgagactcagaaacaattagtcaaactttgacttgatcggaaagattcaccttcctcaagccattcacaatccaatgaggagaaatttccccct |
329 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38477438 |
gctagttgagactcagaaagaattagtcaaactttgacttgatcggaaagattcacc-----caagccattcacaatccaatgaggagaaatttccccct |
38477532 |
T |
|
| Q |
330 |
tatgccttagatcaaaacagaactgataatgcatctgctacatcatatgagtatgacccacataaccagcagctagctcttgccctttctcactgggttg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38477533 |
tatgccttagatcaaaacagaactgataatgcatctgctacatcatatgagtatgacccacataaccagcagctagctcttgccctttctcactgggttg |
38477632 |
T |
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| Q |
430 |
ccttccagcaacagct |
445 |
Q |
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| T |
38477633 |
ccttccagcaacagct |
38477648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 165 - 444
Target Start/End: Original strand, 38466704 - 38466978
Alignment:
| Q |
165 |
tgtttatttttctgagttgctcatgtagataaacatgcctgtacaaatttta-gagacaaataagagctagttgagactcagaaacaattagtcaaactt |
263 |
Q |
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|||||||||||||| |||| |||||||| | | | | |||||||||||||| |||||||| ||||||||||||||||||| ||| |||||| |||||| |
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| T |
38466704 |
tgtttatttttctgtgttggtcatgtaggttcataggtctgtacaaattttaagagacaaacaagagctagttgagactcaaaaagaattagccaaacta |
38466803 |
T |
|
| Q |
264 |
tgacttgatcggaaagattcaccttcctcaagccattcacaatccaatgaggagaaatttcccccttatgccttagatcaaaacagaactgataatgcat |
363 |
Q |
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||||| |||||||| ||||||||||||||||||||||| ||||| ||||||| |||| |||||| ||| |||||||||| ||||||||||||||| |
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| T |
38466804 |
caacttgctcggaaaggatcaccttcctcaagccattcacagtccaacgaggagagattttccccttctgcaatagatcaaaagggaactgataatgcat |
38466903 |
T |
|
| Q |
364 |
ctgctacatcatatgagtatgacccacataaccagcagctagctcttgccctttctcactgggttgccttccagcaacagc |
444 |
Q |
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|| ||||||| ||||| |||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |
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| T |
38466904 |
atgttacatca------tatgatccacataaccagcagctagctcttaccctttctaatcaagttgccttccagcaacagc |
38466978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 323
Target Start/End: Original strand, 38472593 - 38472751
Alignment:
| Q |
164 |
gtgtttatttttctgagttgctcatgtagataaacatgcctgtacaaatttt-agagacaaataagagctagttgagactcagaaacaattagtcaaact |
262 |
Q |
| |
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||||||||||||||| |||| || ||||| || | | | ||||||||||||| |||| |||| || || ||||||| ||| | ||| ||||| |||||| |
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| T |
38472593 |
gtgtttatttttctgtgttggtcgtgtaggtacataggtctgtacaaattttaagagtcaaacaatagttagttgaaacttaaaaagaattaaccaaact |
38472692 |
T |
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| Q |
263 |
ttgacttgatcggaaagattcaccttcctcaagccattcacaatccaatgaggagaaattt |
323 |
Q |
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|||||| | |||||| ||||||||||||||| ||| || ||||| |||||||||||| |
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| T |
38472693 |
acgacttgcttggaaaggatcaccttcctcaagcaatt--cagtccaacgaggagaaattt |
38472751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 33185 - 33130
Alignment:
| Q |
266 |
acttgatcggaaagattcaccttcctcaagccattcacaatccaatgaggagaaat |
321 |
Q |
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||||| || |||||| ||| ||||||||||||||||||| ||||||||||| |||| |
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| T |
33185 |
acttgctcagaaagaatcatcttcctcaagccattcacagtccaatgaggacaaat |
33130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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