View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0710_low_8 (Length: 475)

Name: NF0710_low_8
Description: NF0710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0710_low_8
NF0710_low_8
[»] chr1 (2 HSPs)
chr1 (40-374)||(29879269-29879602)
chr1 (131-231)||(1928965-1929067)
[»] chr3 (1 HSPs)
chr3 (40-369)||(25121080-25121409)
[»] chr4 (3 HSPs)
chr4 (96-374)||(38065686-38065965)
chr4 (131-231)||(38945680-38945782)
chr4 (159-259)||(19109534-19109636)
[»] chr8 (2 HSPs)
chr8 (265-369)||(22192086-22192190)
chr8 (130-350)||(18888934-18889156)
[»] chr7 (2 HSPs)
chr7 (205-369)||(37190293-37190460)
chr7 (46-117)||(37190509-37190579)
[»] chr2 (3 HSPs)
chr2 (118-208)||(39256440-39256530)
chr2 (113-236)||(35061025-35061150)
chr2 (261-349)||(31010086-31010174)
[»] chr5 (1 HSPs)
chr5 (168-300)||(36185604-36185736)
[»] chr6 (1 HSPs)
chr6 (284-362)||(26554111-26554189)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 40 - 374
Target Start/End: Original strand, 29879269 - 29879602
Alignment:
Q  40 tggctttggtggaattctgtgtaactatgtagggttgtttctatcggatttttcaggttttatttcagactcagatgatatcatgttggatgagctttca 139  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29879269 tggctttggtggaattctctgtaactatgcaaggttgtttctatcgggtttttcaggttttatttcagactcagatgatatcatgttggatgagctttca 29879368  T
Q  140 gctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctgactcttgtttgcattaatcttattaatggtcccgtg 239  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  29879369 gctaactatcatgatctgatcgtggccaaggattttggttatgcggagctagtttgttattctgactcttgtttgcattaatcctattaatggtcctgtg 29879468  T
Q  240 gagaaataccatgtttatgcagttcttatccaagacataaaagatttgcttcttcaaagtactgttacggtttgtaacactctcagataagggaaccaat 339  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29879469 gagaaataccatgtttatgcagtttttatccaagacataaaagatttgcttcttcaaagtactgttacgg-ttgtaacactctcagataagggaaccaat 29879567  T
Q  340 gtgcggatttccttgcaaagctcgaagcttgtttt 374  Q
    |||||||||||||||||||||||| ||||| ||||    
T  29879568 gtgcggatttccttgcaaagctcggagcttctttt 29879602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 1929067 - 1928965
Alignment:
Q  131 gagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctga--ctcttgtttgcattaatcttatta 228  Q
    |||||||| |||| ||||||||||||||||||||  ||||||||  ||||| | ||||| ||||| || |||||  |||||||||||||||||||||| |    
T  1929067 gagctttctgctatctatcatggtctgatcatggagaaggatttgagttatacagagcttgtttgctactctgattctcttgtttgcattaatcttataa 1928968  T
Q  229 atg 231  Q
    |||    
T  1928967 atg 1928965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 40 - 369
Target Start/End: Complemental strand, 25121409 - 25121080
Alignment:
Q  40 tggctttggtggaattctgtgtaactatgtagggttgtttctatcggatttttcaggttttatttcagactcagatgatatcatgttggatgagctttca 139  Q
    ||||||||||||||||||| ||||| ||  ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| | || |    
T  25121409 tggctttggtggaattctgcgtaaccatacagggttgtttctatcgggtttttcaggttttattccagactcagatgatatcatgttggttgaacgttta 25121310  T
Q  140 gctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctga--ctcttgtttgcattaatcttattaatggtcccg 237  Q
    | || |||||||| ||| |||||||| |||||||| |||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  25121309 gttatctatcatgatcttatcatggctaaggatttgggttgtgcggagctagtttgttattctgactctcttgttcgcattaatcttattaatggtcccg 25121210  T
Q  238 tggagaaataccatgtttatgcagttcttatccaagacataaaagatttgcttcttcaaagtactgttacggtttgtaacactctcagataagggaacca 337  Q
    |||||||||| ||||||||||  || |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || |||||||    
T  25121209 tggagaaata-catgtttatgtggtccttatccaagacataaaagatttgtttcttcaaagtactgttacggttggtcacactctcagagaa-ggaacca 25121112  T
Q  338 atgtgcggatttccttgcaaagctcgaagctt 369  Q
    || || |||||||||| ||||||||| |||||    
T  25121111 atatgtggatttccttacaaagctcggagctt 25121080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 96 - 374
Target Start/End: Complemental strand, 38065965 - 38065686
Alignment:
Q  96 gttttatttcagactcagatgatatcatgttggatgagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttg 195  Q
    ||||||||  ||||||||||||||| ||||||| ||||||||| |||| |||| ||||||| || |||||||| ||||| |||||| |||||||||||||    
T  38065965 gttttattctagactcagatgatattatgttggctgagctttcggctatctattatggtctaattatggccaaagatttgggttatacggagctagtttg 38065866  T
Q  196 ttattctgactct--tgtttgcattaatcttattaatggtcccgtggagaaataccatgtttatgcagttcttatccaagacataaaagatttgcttctt 293  Q
    |||||||||||||  | |||  || ||| |||||||||||||  |||||||||||||||||||| | ||  |||||||||||||||||||||| ||||||    
T  38065865 ttattctgactctcttatttaaatgaattttattaatggtcca-tggagaaataccatgtttatacggtcattatccaagacataaaagatttacttctt 38065767  T
Q  294 caaagtactgttacggtttgtaacactctcagataagggaaccaatgtgcggatttccttgcaaagctcgaagcttgtttt 374  Q
    ||||||||| ||||||||||  |||||||||||||||||| | | |||||| |||||||| ||||||| ||| ||| ||||    
T  38065766 caaagtacttttacggtttggcacactctcagataagggacctattgtgcgaatttccttacaaagcttgaatcttctttt 38065686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 38945680 - 38945782
Alignment:
Q  131 gagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctga--ctcttgtttgcattaatcttatta 228  Q
    |||||||| ||||  ||||| |||||||||||||| |||||||| |||||| |  |||| ||||| || || ||  |||||||||||||||||||||| |    
T  38945680 gagctttctgctatttatcacggtctgatcatggcgaaggatttgggttatacatagcttgtttgctactcggattctcttgtttgcattaatcttataa 38945779  T
Q  229 atg 231  Q
    |||    
T  38945780 atg 38945782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 19109636 - 19109534
Alignment:
Q  159 tcatggccaaggattttggttatgcggagctagtttgttattctga--ctcttgtttgcattaatcttattaatggtcccgtggagaaataccatgttta 256  Q
    ||||||| |||||||| ||||||   ||||||  |||||||||  |  ||||| ||||||| |||||| ||||||| ||||| |||| ||||||||||||    
T  19109636 tcatggctaaggatttgggttatatagagctaacttgttattcgaattctcttatttgcatcaatcttcttaatggccccgttgagagataccatgttta 19109537  T
Q  257 tgc 259  Q
    |||    
T  19109536 tgc 19109534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 22192086 - 22192190
Alignment:
Q  265 ttatccaagacataaaagatttgcttcttcaaagtactgttacggtttgtaacactctcagataagggaaccaatgtgcggatttccttgcaaagctcga 364  Q
    ||||||| ||||| ||||||||||||| |||||||| |||||| |||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||    
T  22192086 ttatccatgacatgaaagatttgcttcatcaaagtattgttacagtttgtcacactctcagagaatggaaccaatgtgcggattttcttgccaagctcga 22192185  T
Q  365 agctt 369  Q
    |||||    
T  22192186 agctt 22192190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 130 - 350
Target Start/End: Complemental strand, 18889156 - 18888934
Alignment:
Q  130 tgagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctgact--cttgtttgcattaatcttatt 227  Q
    |||||||||  ||| |||||||||||||||||| |  ||| |||  ||||||| ||| |||| |||||| ||||| |  ||||||||||||||| | |||    
T  18889156 tgagctttctcctatctatcatggtctgatcatagataagaattggggttatgtggatctagcttgttactctgattatcttgtttgcattaatttgatt 18889057  T
Q  228 aatggtcccgtggagaaataccatgtttatgcagttcttatccaagacataaaagatttgcttcttcaaagtactgttacggtttgtaacactctcagat 327  Q
    |||||  || | ||||  |||||||| ||||  |  ||||| ||| |||||||| |||||||||||||||||| | | ||||||| | | || || |||     
T  18889056 aatggctccattgagaggtaccatgtctatgtggcccttattcaatacataaaaaatttgcttcttcaaagtaatatcacggtttctcatacgcttagag 18888957  T
Q  328 aagggaaccaatgtgcggatttc 350  Q
    | ||||||||| |||| ||||||    
T  18888956 atgggaaccaaagtgcagatttc 18888934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 205 - 369
Target Start/End: Complemental strand, 37190460 - 37190293
Alignment:
Q  205 ctcttgtttgcattaatcttattaatg----gtcccgtggagaaataccatgtttatgcagttcttatccaagacataaaagatttgcttcttcaaagta 300  Q
    ||||||||||||| ||| |||||||||    ||| ||||||||||||| |||||||  |  | |||||||||||||||||| ||||||||||| ||||||    
T  37190460 ctcttgtttgcataaattttattaatgatcggtctcgtggagaaatactatgtttaatcgatccttatccaagacataaaa-atttgcttctttaaagta 37190362  T
Q  301 ctgttacggtttgtaacactctcagataagggaaccaatgtgcggatttccttgcaaagctcgaagctt 369  Q
    ||||||| |||||| ||||||||||| || ||||  ||| |  |||||| ||||||||||||| |||||    
T  37190361 ctgttacagtttgtcacactctcagagaacggaagtaatatatggattttcttgcaaagctcggagctt 37190293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 37190579 - 37190509
Alignment:
Q  46 tggtggaattctgtgtaactatgtagggttgtttctatcggatttttcaggttttatttcagactcagatga 117  Q
    ||||||||||||| |||||||||||| |||| || |||||  |||||||||||||||| || ||||| ||||    
T  37190579 tggtggaattctgcgtaactatgtagagttg-ttgtatcgagtttttcaggttttattccaaactcaaatga 37190509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 39256530 - 39256440
Alignment:
Q  118 tatcatgttggatgagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctgactct 208  Q
    ||||||||| | |||||||| | ||| |||||||||||||||||||||||  |||||  |||||||||||||||||||||||||| |||||    
T  39256530 tatcatgtttgttgagcttttaactatctatcatggtctgatcatggccatagatttgcgttatgcggagctagtttgttattctaactct 39256440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 35061150 - 35061025
Alignment:
Q  113 gatgatatcatgttggatgagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctga--ctcttg 210  Q
    ||||||||| || | | ||||||||| ||||  |||||||| || |||||||| || ||||| ||||||||  | || | ||| ||||||||  ||||||    
T  35061150 gatgatatcctgctaggtgagctttctgctatatatcatgggctaatcatggcaaaagatttgggttatgcataacttgcttgctattctgattctcttg 35061051  T
Q  211 tttgcattaatcttattaatggtccc 236  Q
     |||||| || |||||||||||||||    
T  35061050 cttgcatcaaccttattaatggtccc 35061025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 349
Target Start/End: Complemental strand, 31010174 - 31010086
Alignment:
Q  261 gttcttatccaagacataaaagatttgcttcttcaaagtactgttacggtttgtaacactctcagataagggaaccaatgtgcggattt 349  Q
    |||||||| ||||||||||||||  | |||| |||||||| ||| |  |||||| | ||||||||| ||||||| |||| ||| |||||    
T  31010174 gttcttatacaagacataaaagagcttcttcatcaaagtaatgtcattgtttgtgatactctcagagaagggaatcaatatgctgattt 31010086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 36185736 - 36185604
Alignment:
Q  168 aggattttggttatgcggagctagtttgttattctga--ctcttgtttgcattaatcttattaatggtcccgtggagaaataccatgtttatgcagttct 265  Q
    ||||||| |||||| ||||| ||| |||||||| |||  |||||||||||||  ||||| ||||||| ||||| ||||  |||||||||||||| |||||    
T  36185736 aggatttgggttatacggagttagcttgttattatgattctcttgtttgcatatatcttcttaatggccccgttgaga--taccatgtttatgcggttct 36185639  T
Q  266 tatccaagacataaaagatttgcttcttcaaagta 300  Q
    | | ||| |||||||| | ||||||||||||||||    
T  36185638 tcttcaaaacataaaacaattgcttcttcaaagta 36185604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 26554111 - 26554189
Alignment:
Q  284 tttgcttcttcaaagtactgttacggtttgtaacactctcagataagggaaccaatgtgcggatttccttgcaaagctc 362  Q
    ||||||||||||||||||| |||| |||||| ||| ||||||| ||||||| |||| ||| ||||||||| ||||||||    
T  26554111 tttgcttcttcaaagtacttttacagtttgtcacattctcagagaagggaatcaatatgcagatttccttccaaagctc 26554189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 907 times since January 2019
Visitors: 4357