View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0710_low_9 (Length: 427)
Name: NF0710_low_9
Description: NF0710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0710_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 29 - 419
Target Start/End: Original strand, 47038092 - 47038482
Alignment:
| Q |
29 |
aagtatcatatcaataatattaaacctctaagtgaaaaagcattaataatcttcaggttctggaaacttgttcaaatcaggtttcacatcagcgttgaat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47038092 |
aagtatcatatcaataatattaaacctctaagtgaaaaagcattaataatcttcaggttctggaaacttgttcaaatcaggtttcacatcagcgttgaat |
47038191 |
T |
|
| Q |
129 |
tgatcggaatcagaacgagaagaagcttcaagagccgcttgaagagcatcaactctagcaccgactttggtagcttttttgcgtattaaatcagcagaca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47038192 |
tgatcggaatcagaacgagaagaagcttgaagagccgcttgaagagcatcaactctagcaccgactttggtagcttttttgcgtattaaatcagcagaca |
47038291 |
T |
|
| Q |
229 |
tgttaccttgctgaatagaaccgtcgttgttttcttcgtcgtcttcgagcaataattcggggaaattaagacgagccgtaggacctcttaaatagaatac |
328 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47038292 |
tgttaccttgctgaatagaaccgtccttgttttcttcgtcgtcttcgagcaataattcggggaaattaagacgagccgtaggacctcttaaatagaatac |
47038391 |
T |
|
| Q |
329 |
ggcggtgtcgtaggcacgagcagcagctaccggagtgatgtaagaacctaaccatattcttgatcttttatttggttctcttatctctgct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47038392 |
ggcggtgtcgtaggcacgagcagcagctaccggagtgatgtaagaacctaaccatattcttgatcttttatttggttctcttatttctgct |
47038482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 5681578 - 5681526
Alignment:
| Q |
366 |
atgtaagaacctaaccatattcttgatcttttatttggttctcttatctctgc |
418 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
5681578 |
atgtaagaacctaaccaaattcttgatcttttgtttggttctctaatctctgc |
5681526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 6026885 - 6026845
Alignment:
| Q |
165 |
gcttgaagagcatcaactctagcaccgactttggtagcttt |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
6026885 |
gcttgaagagcatcaactctagcaccaacttcagtagcttt |
6026845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 24174098 - 24174050
Alignment:
| Q |
369 |
taagaacctaaccatattcttgatcttttatttggttctcttatctctg |
417 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||||| ||||||| |||| |
|
|
| T |
24174098 |
taagaacctaaccatattcttgttttttgatttggtgctcttatttctg |
24174050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1168 times since January 2019
Visitors: 4365