View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0711_high_1 (Length: 725)
Name: NF0711_high_1
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0711_high_1 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 98 - 619
Target Start/End: Complemental strand, 43592 - 43067
Alignment:
| Q |
98 |
cttaggtgtgcctctttaatgattttaatggtgnnnnnnnacaatactatataacttcattttaccagctcattccgtttacaatatgctggttctttta |
197 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43592 |
cttaggtgtgcctctttaatgattttaatggtgtttttttacaatactatataacttcattttaccagctcattccgtttacaatatgctggttctttta |
43493 |
T |
|
| Q |
198 |
tttagagtcaagcacaagattcattgttttgttccctaaaaatagtcttcttcttttattgttgtgtgcagaatatccaatttttgtatattttcacatt |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43492 |
tttagagtcaagcacaagattcattgttttgttccctaaaaatagtcttcttcttttattgttgtgtgcagaatatccaatttttgtatattttcacatt |
43393 |
T |
|
| Q |
298 |
atgcactcatttcatttaacattttagtgcatccaaatgtgaagtttagacaagaactttacatgatcgttttgtgttgttctacaacatcttggaagag |
397 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43392 |
atgcactcatttcatttaacattttagtgcacccaaatgtgaagtttagacaagaactttacatgatcgttttgtgttgttctacaacatcttggaagag |
43293 |
T |
|
| Q |
398 |
ccatattcaaaatcacaagatttgtacgatgctatgactcatttatcattgtttatctactatattttgctatagcatgttcgtgtctttgttctaatta |
497 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43292 |
ccatattcaaaatcacaagatttgtacgatgctatgactcatttatcattgtttatctactatattttgctatagcatgttcgtgtctttgttctaatta |
43193 |
T |
|
| Q |
498 |
tgttgttgttcatgctctttgcttctagagtgagtctcttctttcataactttgattaatcagttggcaataagtttgagaaccaaagagagggttaaga |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43192 |
tgttgttgttcatgctctttgcttctagagtgagtctcttctttcataactttgattaatcagttggcaataagtttgagaaccaaagagagggttaaga |
43093 |
T |
|
| Q |
598 |
aggc----tatggtgttgtctctgct |
619 |
Q |
| |
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|||| |||||||||||||||||| |
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| T |
43092 |
aggccaaatatggtgttgtctctgct |
43067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 98 - 307
Target Start/End: Complemental strand, 2682064 - 2681858
Alignment:
| Q |
98 |
cttaggtgtgcctctttaatgattttaatggtgnnnnnnnacaatactatataacttcattttaccagctcattccgtttacaatatgctggttctttta |
197 |
Q |
| |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
2682064 |
cttatgtgtgcctctttaatgattttaatggtgtttttttacaatactatataacttcattttaccagctcattctgtttacaatatgttggttcttttg |
2681965 |
T |
|
| Q |
198 |
tttagagtcaagcacaagattcattgttttgttccctaaaaatagtcttcttcttttattgttgtgtgcagaatatccaatttttgtatattttcacatt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2681964 |
tttagagtcaagcacaagattcattgttttgttccataaaaatag---tattcttttattgttgtgtgcagaatatccaatttttgtatattttcacatt |
2681868 |
T |
|
| Q |
298 |
atgcactcat |
307 |
Q |
| |
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| ||||||| |
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| T |
2681867 |
acacactcat |
2681858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 98 - 307
Target Start/End: Original strand, 5481247 - 5481453
Alignment:
| Q |
98 |
cttaggtgtgcctctttaatgattttaatggtgnnnnnnnacaatactatataacttcattttaccagctcattccgtttacaatatgctggttctttta |
197 |
Q |
| |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
5481247 |
cttatgtgtgcctctttaatgattttaatggtgtttttttacaatactatataacttcattttaccagctcattctgtttacaatatgttggttcttttg |
5481346 |
T |
|
| Q |
198 |
tttagagtcaagcacaagattcattgttttgttccctaaaaatagtcttcttcttttattgttgtgtgcagaatatccaatttttgtatattttcacatt |
297 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5481347 |
tttagagtcaagcacaagattcattgttttgttccataaaaatag---tattcttttattgttgtgtgcagaatatccaatttttgtatattttcacatt |
5481443 |
T |
|
| Q |
298 |
atgcactcat |
307 |
Q |
| |
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| ||||||| |
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|
| T |
5481444 |
acacactcat |
5481453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 554 - 601
Target Start/End: Complemental strand, 26544584 - 26544537
Alignment:
| Q |
554 |
taatcagttggcaataagtttgagaaccaaagagagggttaagaaggc |
601 |
Q |
| |
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||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
26544584 |
taatcagtttggaataagtttgagaaccaaagagagggttaagaaggc |
26544537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 98 - 307
Target Start/End: Complemental strand, 45005490 - 45005284
Alignment:
| Q |
98 |
cttaggtgtgcctctttaatgattttaatggtgnnnnnnnacaatactatataacttcattttaccagctcattccgtttacaatatgctggttctttta |
197 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
45005490 |
cttatgtgtgcctctttaatgattttaatggtgtttttttacaatactatataacttcattttaccagctcattctgtttacaatatgttggttcttttg |
45005391 |
T |
|
| Q |
198 |
tttagagtcaagcacaagattcattgttttgttccctaaaaatagtcttcttcttttattgttgtgtgcagaatatccaatttttgtatattttcacatt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45005390 |
tttagagtcaagcacaagattcattgttttgttccataaaaatag---tattcttttattgttgtgtgcagaatatccaatttttgtatattttcacatt |
45005294 |
T |
|
| Q |
298 |
atgcactcat |
307 |
Q |
| |
|
| ||||||| |
|
|
| T |
45005293 |
acacactcat |
45005284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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