View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0711_high_20 (Length: 225)
Name: NF0711_high_20
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0711_high_20 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10429440 - 10429216
Alignment:
| Q |
1 |
catgaagtgttggaagaaaccctacttcttatgggtgagtacgctaggtatatgaacacagtcaactttgaaggatatagaatattggagatggatgtgt |
100 |
Q |
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| T |
10429440 |
catgaagtgttggaagaaaccctacttcttatgggtgagtacgctaggtatatgaacacagtcaactttgaaggatatagaatattggagatggatgtgt |
10429341 |
T |
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| Q |
101 |
ttgttgacacaacatcaaatattagtgatgatgtgaatgctattgcgtccctttccaagatgttggagaagcttaaagtgaaagatgttgatacttcttt |
200 |
Q |
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| T |
10429340 |
ttgttgacacaacatcaaatattagtgatgatgagaatgctattgcgtccctttccaagatgttggagaagcttaaagtgaaagatgttgatacttcttt |
10429241 |
T |
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| Q |
201 |
ttgttcaatggaacaatgttcaatt |
225 |
Q |
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|||||||| ||||||||||||||| |
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| T |
10429240 |
ttgttcaagagaacaatgttcaatt |
10429216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 10397120 - 10397024
Alignment:
| Q |
2 |
atgaagtgttggaagaaaccctacttcttatgggtgagtacgctaggtatatgaacacagtcaactttgaaggatatagaatattggagatggatgt |
98 |
Q |
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| T |
10397120 |
atgaagcgttggaagacgctctatttcttatgggtgacaatgctaagcatatgagcagagtcaactttgaaggagatagaatattgaagatggatgt |
10397024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 10407340 - 10407244
Alignment:
| Q |
2 |
atgaagtgttggaagaaaccctacttcttatgggtgagtacgctaggtatatgaacacagtcaactttgaaggatatagaatattggagatggatgt |
98 |
Q |
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|||||| ||||||||| | ||| ||||||||||||| | |||||| |||||| || ||||||||||| |||| ||||||||||| |||||||||| |
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| T |
10407340 |
atgaagcgttggaagacgctctatttcttatgggtgacaatgctaggcatatgagcagagtcaactttggaggagatagaatattgaagatggatgt |
10407244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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