View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0711_low_13 (Length: 364)
Name: NF0711_low_13
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0711_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 70 - 363
Target Start/End: Complemental strand, 27589195 - 27588902
Alignment:
| Q |
70 |
tcagatgaaagcatttgatccgatcctaatgaaaacaataagtaagataattaaattatataaataaatgatgatcgctaatgaaaaataatcataggaa |
169 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27589195 |
tcagatgaaagcatttgaaccgatcctaatgaaaacaataagtaagataattaaaatatataaataaatgatgatcgctaatgaaaaataatcataggaa |
27589096 |
T |
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| Q |
170 |
ttcatatgaaaatgcaagaagaaataattacataattgacataagaaagaataaaaatgcttaccaacgttgtctacgagtttctcttgcatgttgttta |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27589095 |
ttcatatgaaaatgcaagaagaaataattacataattgacataagaaagaataaaaatgcttaccaacgttgtctacgagtttctcttgcatgttgttta |
27588996 |
T |
|
| Q |
270 |
ccnnnnnnnnggtctcctcatctttgagagacacttcatgagcacgcttattttctgacattgtaatcaactagatagatattgttggacatgc |
363 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||| |
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| T |
27588995 |
ccttttttttggtctcctcatctttgagagacacttcatgagcacgcttattttctgacattgtgatcaactagatagatttggttgcacatgc |
27588902 |
T |
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