View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0711_low_15 (Length: 335)
Name: NF0711_low_15
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0711_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 39044818 - 39045053
Alignment:
| Q |
1 |
ctagaatagccttcaccatggattgggcggttacgagattggttgatgagaggttgatggccgattggatgagttggagagcggtgggatttggagggag |
100 |
Q |
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| T |
39044818 |
ctagaatagccttcaccatggattgggcggttacgagattggtagatgagaggttgatggccgattggatgagttggagagcggtgggatttggagggag |
39044917 |
T |
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| Q |
101 |
attggcgagtgatgattcgcattgttgtgggaatcgggttgctttgcaggcttgttggatctctgacccggcggtgggagaaacggagggggagggagta |
200 |
Q |
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| T |
39044918 |
attggcgagtgatgattcgcattgttgtgggaatcgggttgctttgcaggcttgttggatctctgacccggcggtgggagaaacggagggggagggagta |
39045017 |
T |
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| Q |
201 |
ggttggtggtgattgtggttgtgatggtgagtggcg |
236 |
Q |
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| T |
39045018 |
ggttggtggtgattgtggttgtgatggtgagtggcg |
39045053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 40022292 - 40022367
Alignment:
| Q |
141 |
gctttgcaggcttgttggatctctgacccggcggtgggagaaacggagggggagggagtaggttggtggtgattgt |
216 |
Q |
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| T |
40022292 |
gctttgcaggcttgttgaatctccgacgcggccgtgggataaacggagggagaaggagtgcgtgggtggtggttgt |
40022367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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